Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20 174 1e-38 seq24 86.0 6e-12 >seq20 Length=1136993 Score = 174 bits (192), Expect = 1e-38 Identities = 526/812 (65%), Gaps = 84/812 (10%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||| | ||||| || ||| | || ||||| ||||| | ||||||||||| || || Sbjct 122595 GGTTGAACGCTTTTCTCAGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCA 122654 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| || ||| | || || ||||||||| || || || || |||||| | | Sbjct 122655 AATAGCCATAGAGAACATTCACTCGGAAATGTATAGCCTCCTGATTGACACGTACATTCA 122714 Query 57857 GGACAACGACGAGAAACGTA---GACTGTTCAACGCGATCGAAACAATGCCC-GCGATCG 57912 ||| | | ||| ||| | ||||||||||| ||||| || || || ||| | Sbjct 122715 AGACGAAGCGGAG---CGTTACCGCCTGTTCAACGCTATCGAGACCATTCCGTGCGTTAA 122771 Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGC-CACG--GCCACG-TTCGCC 57968 |||||||| || ||| | | |||||| ||| || | | ||| ||| Sbjct 122772 G-AAGAAGGCCGATTGGGCTCTACGATGGATC----GCGGACAAGAAGTCACCATTCAGT 122826 Query 57969 GAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCA 58028 || | ||| | || || |||||||| ||||| ||||||||||||||||| || || | Sbjct 122827 GATCGACTAGTAGCATTTGCCGCCGTTGAAGGCATATTCTTTTCGGGCAGTTTCGCTTCG 122886 Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 || || ||| | |||||||| || || ||||| || || || |||||||| ||| | || Sbjct 122887 ATCTTCTGGCTAAAGAAACGTGGTCTTATGCCAGGTCTCACTTTTAGCAATGAGCTCATC 122946 Query 58089 TCGCGCGACGA------------------------------------------------- 58099 || || || || Sbjct 122947 TCCCGAGATGAGGTACTATTCATTGCTTTGTTGCTTTTTTTAAAAATTTCGCATTTATTT 123006 Query 58100 --GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGT--CAATAAACCGA 58155 |||| | || ||||||||| || || ||| |||||| ||| || | ||| Sbjct 123007 TAGGGTTTGCACTGTGATTTTGCTTGTCTGCTGTTTTCTCAC-TTGAAGCACAAGACCAG 123065 Query 58156 CGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 | || | |||||| | | || || | |||||||||| || || | |||||| | | Sbjct 123066 CAAGGAA-CGCATCGAGCAGATCATAAGAGAGGCGGTCGTCATTGAGCAAGAGTTTCTGA 123124 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 ||||||| || ||||| | || |||| ||||| || |||||| ||||| | Sbjct 123125 CCGAAGCACTTCCGGTCAACTTGATCGGCATGAATTGCGAACTGATGTGCCGATACATAG 123184 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCAT----TACAACACG 58331 ||| || ||||| | | ||| | ||| ||||| || || ||||| | Sbjct 123185 AGTACGTGGCCGATCGTTTATTGGTTGAA----TTGGACTGCAACAAGATATACAATTCT 123240 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaa 58391 | |||||||| || |||||| | |||| ||||| || || ||||| || || |||||| Sbjct 123241 GAGAATCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAGACCAATTTCTTCGAA 123300 Query 58392 aaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAG-GACGA 58450 | ||| || ||||||||||||| | |||||| ||| |||| |||| | ||| ||| Sbjct 123301 AGAAAGGTGGGCGAATATCAAAAGTGCGGCGTAATGGGCGGCTACAA-TCAGAGTCACG- 123358 Query 58451 TATTTTCACTTTGGATGCTGCCTTTTAATGTG 58482 |||||||||| |||| | |||||||| || Sbjct 123359 --TTTTCACTTTAGATGAAGACTTTTAATCTG 123388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 ||||| |||| || || ||||||| |||||||||| | |||||||| || ||||| Sbjct 122341 TTTGTACTGTTGCCTCTTCAATATCCGGACATTTGGAGCTACTACAAAAAAGCCGAAGCT 122400 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGA 57652 || |||||||||||||| || || |||||| | || ||| ||||||||| Sbjct 122401 TCATTTTGGACCGTCGAGGAGGTTGACCTGAGCAGAGACATGACCGATTGGGA 122453 >seq24 Length=829597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || |||||||||| || || ||| |||| || || ||||| Sbjct 293914 ATGCAAATTTTTGTCAAAACATTGACAGGCAAGACCATTACCCTCGAAGTAGAGCCGTCG 293973 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| |||||||| || | ||||| |||||| Sbjct 293974 GACACCATTGAGAATGTTAAAACTAAAATTCAAGACAAGGAGGGTATTCCGCCGGACCAG 294033 Query 31313 CAGCGTCTAATATTCGCTGGCAAAC 31337 ||||| || || ||||| || |||| Sbjct 294034 CAGCGGCTTATCTTCGCCGGTAAAC 294058 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||||||||||| || ||| | || || || || || Sbjct 295614 ATGCAAATATTTGTCAAGACATTGACAGGCAAAACTATAACCCTTGAAGTGGAGCCCTCG 295673 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || ||| || ||| |||||| || || | || || || ||| Sbjct 295674 GACACTATCGACAACGTGAAAGCGAAGATACAGGACAAAGAGGGAATTCCTCCTGATCAG 295733 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||| | || || ||||| Sbjct 295734 CAGCGTTTGATTTTTGCTGG 295753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764694943520