Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20 132 6e-26 seq5 82.4 1e-10 >seq20 Length=1136993 Score = 132 bits (146), Expect = 6e-26 Identities = 231/335 (69%), Gaps = 7/335 (2%) Strand=Plus/Minus Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 ||| ||||| || ||||| || ||||| || || ||||| || || |||||||| || Sbjct 122931 AAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATCGAAGCGAAACTGCC 122872 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33751 |||||||| || ||||| || || ||||| || | |||| || | | | || | Sbjct 122871 CGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCAC--TGAATGGTGAC 122814 Query 33752 GTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33806 || ||| ||||| | ||||||||||||||||||| || || || || || || Sbjct 122813 TTCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCACGGAATGGTC 122754 Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || || || || || || || || |||| || || || || |||| Sbjct 122753 TCGATAGCGTTGAACAGGCGGTAACGCTCCGCTTCGTCTTGAATGTACGTGTCAATCAGG 122694 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 || |||||||||||||| |||||||| || ||||| || || || ||||| || || | | Sbjct 122693 AGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAAAGCAGCGA 122634 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 ||||| || | ||| | ||| | |||| ||||| Sbjct 122633 GCCTCTGTCACCTGAATTTCCTGAGAAAAGCGTTC 122599 >seq5 Length=2343098 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||||||||||||| || |||||| ||| |||||| || || | || | Sbjct 1062951 TCCACCCGTAAAAATGCATAGAAGTAAGTTTGCCATAGTTCGGATGAGCCATGTATATGT 1062892 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||||| ||||| ||||||||||| | || |||||||| | ||||| || Sbjct 1062891 TAAGGGATTGCGACTGATCAATGAAGGCTCCACGATCCGCAGCCATATCGATGATTACCT 1062832 Query 62233 TTTGTGCAATTTCCCAAA 62250 | || | ||||||||||| Sbjct 1062831 TCTGCGGAATTTCCCAAA 1062814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815190947680