Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 6e-12 >seq5 Length=2343098 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || ||||| || |||| |||||| || | ||||| | ||| | |||||| | || || Sbjct 1057338 CCAATTCCTCCGGCATTTTTTGAAATGATCGCGCACTCTTTGAGCGTATCGTAGATTCCC 1057279 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 || || ||||| | || |||| |||| ||| |||||| || || || |||| Sbjct 1057278 TCAATGCTGTCCGCTTTCATTGTGAGTAGAAAGCAACTACTCAGCTGTGGTTTGCAAGTT 1057219 Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATAT 38475 || | |||||| | ||||| || || || | ||||||||||| |||| | |||||| Sbjct 1057218 CCAGAGTTAAAAAGGGTAGGCGAGGCGTGGGTAAACCATTTTTCTGACATCAAGTTATAT 1057159 Query 38476 GT 38477 || Sbjct 1057158 GT 1057157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523007892640