Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq20 143 4e-29 seq5 87.8 2e-12 >seq20 Length=1136993 Score = 143 bits (158), Expect = 4e-29 Identities = 239/343 (70%), Gaps = 7/343 (2%) Strand=Plus/Minus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || ||| ||| ||||| || ||||| || ||||| || || ||||| || || || || Sbjct 122939 TCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATCGAAGCG 122880 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319 || || |||||||| || ||||| || || ||||| || | |||| || | || Sbjct 122879 AAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCACTG-AA 122821 Query 36320 CCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 36374 | ||| || ||| ||||| | ||||||||||||||||||| || || || | Sbjct 122820 TGGTGACT-TCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCACG 122762 Query 36375 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 36434 | || ||||| ||||| || || || || || |||| || || || | Sbjct 122761 GAATGGTCTCGATAGCGTTGAACAGGCGGTAACGCTCCGCTTCGTCTTGAATGTACGTGT 122702 Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494 |||||| || |||||||||||||| |||||||| || ||||| ||||| || ||||| | Sbjct 122701 CAATCAGGAGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAA 122642 Query 36495 AACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 | || | |||||| || | ||| | ||| | |||| ||||| Sbjct 122641 AGCAGCGAGCCTCTGTCACCTGAATTTCCTGAGAAAAGCGTTC 122599 >seq5 Length=2343098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||||||||||||| || |||||| ||| |||||| || || | || | Sbjct 1062951 TCCACCCGTAAAAATGCATAGAAGTAAGTTTGCCATAGTTCGGATGAGCCATGTATATGT 1062892 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||||| ||||| ||||||||||| | || |||||||| | ||||| || Sbjct 1062891 TAAGGGATTGCGACTGATCAATGAAGGCTCCACGATCCGCAGCCATATCGATGATTACCT 1062832 Query 65026 TTTGTGGAATTTCCCAAA 65043 | || ||||||||||||| Sbjct 1062831 TCTGCGGAATTTCCCAAA 1062814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170282489040