Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20 141 1e-28 seq5 95.1 2e-14 >seq20 Length=1136993 Score = 141 bits (156), Expect = 1e-28 Identities = 242/350 (69%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || || || ||| ||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 122945 ATGAGCTCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATC 122886 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || || || || |||||||| || ||||| || |||||||| || || |||| || Sbjct 122885 GAAGCGAAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCA 122826 Query 50116 CCATAACTGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 50170 | | | ||| | || ||| ||||| | ||||||||||||||||||| || | Sbjct 122825 C--TGAATGGTGACTTCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAA 122768 Query 50171 CACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 50230 | || || || || || || || || || || || || |||| || | Sbjct 122767 CGCACGGAATGGTCTCGATAGCGTTGAACAGGCGGTAACGCTCCGCTTCGTCTTGAATGT 122708 Query 50231 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 50290 | || || |||| || |||||||||||||| |||||||| || ||||| || || || | Sbjct 122707 ACGTGTCAATCAGGAGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGC 122648 Query 50291 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 |||| || || | |||||| || | ||| | ||| | |||| |||||| Sbjct 122647 CGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCTGAGAAAAGCGTTCA 122598 >seq5 Length=2343098 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 80179 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 80236 |||||||| || |||| |||||| | | |||| | || ||||| || || ||| Sbjct 1057377 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 1057320 Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 | || || | ||||| ||| | |||||| ||||| ||||| ||||| || | ||| Sbjct 1057319 TTGAAATGATCGCGCACTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCTTTCA 1057260 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 | | |||||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 1057259 TTGTGAGTAGAAAGCAACTACTCAGCTGTGGTTTGCAAGTTCCAGAGTTAAAAAGGGTAG 1057200 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 | || ||||| |||||||||||||| |||| Sbjct 1057199 GCGAGGCGTGGGTAAACCATTTTTCTGACA 1057170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266052621840