Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq20 136 4e-27 >seq20 Length=1136993 Score = 136 bits (150), Expect = 4e-27 Identities = 241/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 13672 CAATGAA--GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 ||||||| | ||||||||| || || || || ||| || | |||||||| | Sbjct 122971 CAATGAATAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGACCTGGCATAA 122912 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 || ||||| |||| ||| || || | |||||| || ||||||||||| || |||| Sbjct 122911 GACCACGTTTCTTTAGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAATATGCCTTCAA 122852 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 | || ||||| |||| |||||| || | || | || || |||| | |||||| | Sbjct 122851 CGGCGGCAAATGCTACTAGTCGATCACTGAATGGTGACTTCTTGTCCGCGATCCATCGTA 122792 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 |||||| || | || || |||| | || || ||||| || ||||| | | | Sbjct 122791 GAGCCCAATCGGCCTTCTTCTTAACGCACGGAATGGTCTCGATAGCGTTGAACAGGCGGT 122732 Query 13910 --CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 | || || || |||| |||||| || ||||| || | |||||||||||| ||||| Sbjct 122731 AACGCTCCGCTTCGT-CTTG-AATGTACGTGTCAATCAGGAGGCTATACATTTCCGAGTG 122674 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||| ||||| ||||| || || || ||||| || | ||| |||| Sbjct 122673 AATGTTCTCTATGGCTATTTGGAAGCCGTAAAAGCAGCGAGCCTCTG 122627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586969397840