Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 7e-13 >seq5 Length=2343098 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 72262 ATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 |||||||| || |||| |||||| || |||| | || ||||| || || ||| Sbjct 1057377 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 1057320 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | || || | ||||| ||| | |||||| ||||| ||||| || || || | ||| Sbjct 1057319 TTGAAATGATCGCGCACTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCTTTCA 1057260 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 | | |||||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 1057259 TTGTGAGTAGAAAGCAACTACTCAGCTGTGGTTTGCAAGTTCCAGAGTTAAAAAGGGTAG 1057200 Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 | || ||||| |||||||||||||| |||| Sbjct 1057199 GCGAGGCGTGGGTAAACCATTTTTCTGACA 1057170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||||||||||||| || |||||| |||| | |||| || |||| || | Sbjct 1062951 TCCACCCGTAAAAATGCATAGAAGTAAGTTTGCCATAGTTCGGATGAGCCATGTATATGT 1062892 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | || || ||||| ||||||||||| | || |||||||| | ||||| || Sbjct 1062891 TAAGGGATTGCGACTGATCAATGAAGGCTCCACGATCCGCAGCCATATCGATGATTACCT 1062832 Query 70988 TTTGTGGAATTTCCCAAA 71005 | || ||||||||||||| Sbjct 1062831 TCTGCGGAATTTCCCAAA 1062814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136632892560