Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq20 150 3e-31 >seq20 Length=1136993 Score = 150 bits (166), Expect = 3e-31 Identities = 243/342 (71%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 125221 CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATG 125279 |||||| ||| ||||||||||| |||||||| || |||||| | |||||||||||| Sbjct 122627 CAGAGGC-TCGCTGCTTTTACGGCTTCCAAATAGCCATAGAGAACATTCACTCGGAAATG 122685 Query 125280 TA----CTCTACACTGATTGACATGTACATTCG---CGATCCGCAACGTAAACACATGCT 125332 || ||| |||||||||| |||||||| ||| || | ||| | | | || | Sbjct 122686 TATAGCCTC----CTGATTGACACGTACATTCAAGACGAAGCGGAGCGTTACCGCCTGTT 122741 Query 125333 CTTTAACGCAATCGACACGGTGCCGT-CTATACGTAAAAAGGCTCAATGGGTGATTCGGT 125391 | ||||| ||||| || | |||| | || | || ||||| | |||| | || | Sbjct 122742 C---AACGCTATCGAGACCATTCCGTGCGTTAAG-AAGAAGGCCGATTGGGCTCTACGAT 122797 Query 125392 GGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGG 125451 |||||| ||| | ||||| | | | || |||| || ||||| |||||||| || | Sbjct 122798 GGATCGCGGACAAGAAGTCACCATTCAGTGATCGACTAGTAGCATTTGCCGCCGTTGAAG 122857 Query 125452 GCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGC 125511 |||| ||||||||||| ||||| || | ||||| ||||| ||||| || || || |||| Sbjct 122858 GCATATTCTTTTCGGGCAGTTTCGCTTCGATCTTCTGGCTAAAGAAACGTGGTCTTATGC 122917 Query 125512 CCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 | || || || || || ||| | || || ||||| |||| Sbjct 122918 CAGGTCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGAGG 122959 Score = 131 bits (144), Expect = 2e-25 Identities = 160/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || ||||||||||| |||||| | || ||||||| | |||| |||||||| ||| | Sbjct 123106 ATTGAGCAAGAGTTTCTGACCGAAGCACTTCCGGTCAACTTGATCGGCATGAATTGCGAA 123165 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 || |||||| |||||||||| ||||| |||||| || || || ||| || | Sbjct 123166 CTGATGTGCCGATACATAGAGTACGTGGCCGATCGTTTATTGGTTGAATTGGACTGCAAC 123225 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837 ||||| ||||| | ||||||| || || || ||| | ||||| || || |||||| Sbjct 123226 AAGATATACAATTCTGAGAATCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAG 123285 Query 125838 ACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA-CAAA 125873 ||||| || ||||| | ||||| |||| || |||| Sbjct 123286 ACCAATTTCTTCGAAAGAAAGGTGGGCGAATATCAAA 123322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056365448560