Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq20 104 2e-17 >seq20 Length=1136993 Score = 104 bits (114), Expect = 2e-17 Identities = 222/332 (67%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 13187 ATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATA 13246 || ||||| || ||| || ||||| |||||||| || ||||| || | ||| || || Sbjct 122945 ATGAGCTCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATC 122886 Query 13247 GCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCA 13306 | ||| || |||||||| ||||| |||||||| || ||||| |||| | | ||| Sbjct 122885 GAAGCGAAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCA 122826 Query 13307 CCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACG 13366 | | | || || | | ||||| | ||||| | || || | |||||| Sbjct 122825 CTGAATGGTGACTTCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACG 122766 Query 13367 CAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAA 13426 || || | || || ||||| || | | ||| |||| ||| || Sbjct 122765 CACGGAATGGTCTCGATAGCGTTGAACAGGCGGTAACGCTCCGCTTCGTCTTGAATGTAC 122706 Query 13427 GTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCA 13486 || || |||| | |||||||||||| || ||||| || || || ||||||||||| || Sbjct 122705 GTGTCAATCAGGAGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCG 122646 Query 13487 TAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||| || | |||||||| ||||||| ||| Sbjct 122645 TAAAAGCAGCGAGCCTCTGTCACCTGAATTTC 122614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980792705012