Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq24 113 1e-19 >seq24 Length=829597 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | |||||||||||| || || ||||||||||| || || || | Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 294276 TTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAGA 294217 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 294216 GTTTTCACAAATATCTGCAT 294197 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||||| | ||| ||||| || || || || ||||| || || ||||| || Sbjct 295471 CCGGCAAAAATTAATCGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGGATCTTCGCC 295412 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||| ||||||| |||||| ||| || || || || ||||||||||| || || || Sbjct 295411 TTTACGTTTTCTATGGTATCCGAAGGCTCCACTTCCAGCGTAATAGTCTTCCCTGTCAGC 295352 Query 104540 GTTTTTACAAATATCTGCATT 104560 ||||| || ||||| |||||| Sbjct 295351 GTTTTCACGAATATTTGCATT 295331 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| ||||| | ||| ||||| ||||| || ||||| ||||| |||||||||| Sbjct 293767 CCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTGTC 293708 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | ||| ||| || || || || || || ||||| || || || || Sbjct 293707 TTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAGC 293648 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 293647 GTTTTCACAAATATCTGCAT 293628 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 ||| | ||||||| || |||||||| || | |||||||||||| ||||| || || |||| Sbjct 295198 CTTGTTGTTGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTAT 295139 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | |||||||| | ||||| || || | ||||| || || || || | || || | Sbjct 295138 CTTGAATCTTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTG 295079 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || |||||||| ||||| || ||||| Sbjct 295078 TTTTTCCGGTCAGTGTTTTCACAAAGATTTGCAT 295045 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | ||| ||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || || | || || || || || || || || ||||| || || || | | Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || |||||||| |||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||||| | |||||||| || || || ||||| ||||||||||| || Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || ||||| | || || || || || || || || || ||||| ||||| Sbjct 294845 GCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTC 294786 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 | ||||| ||||| || |||||| Sbjct 294785 AAAGTTTTCACAAAAATTTGCATT 294762 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| |||| | ||| ||||| || || || || ||||| ||||| || || Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTT 294563 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||| || ||||| | ||||| || || || || || || || || || ||||| Sbjct 294562 TGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGT 294503 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||||||||| Sbjct 294502 GAGCGTCTTAACGAATATCTGCAT 294479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393885798648