Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq22 134 1e-26 >seq22 Length=1093107 Score = 134 bits (148), Expect = 1e-26 Identities = 138/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 5320 TTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC-CTCAAAGTCGCTGTTTCCGA 5378 |||||| || || |||||||| | || ||| | | || || || || || ||||| | Sbjct 787499 TTCGCAGATAAGTTGAGCTATGCGATCGCCCCTGTGTACGCTGAACTTCTCT-TTTCCAA 787441 Query 5379 AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCA 5438 | || ||||| || || || |||||||||| ||||||| ||||||| ||||| || |||| Sbjct 787440 AATTGAACAGTACTACTCCAACATTGCCTCTGTAGTCTCCGTCGATCACGCCGGCTCCCA 787381 Query 5439 CGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACC 5496 ||||||| |||| || || |||||||| ||||| || || | |||||||||||||| Sbjct 787380 CGTCGATGCAGTGCTTAACTGCAAGGCCTGAACGCGGGGCAACACGTCCGTAGCAACC 787323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447748687354720