Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq22 122 7e-23 >seq22 Length=1093107 Score = 122 bits (134), Expect = 7e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 5585 TCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAG 5644 |||||||| || || ||||| || |||||| | | ||| ||| | | | || || Sbjct 787498 TCGCAGATAAGTTGAGCTATGCGATCGCCCCTGTGTACGCTGAACTTCTCTTTTCCAAAA 787439 Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 |||||||| || || || || ||||| | |||||| |||| |||||||| || |||||| Sbjct 787438 TTGAACAGTACTACTCCAACATTGCCTCTGTAGTCTCCGTCGATCACGCCGGCTCCCACG 787379 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCG 5764 |||||| ||||||| || || ||||| || || || || || || |||||||| || || Sbjct 787378 TCGATGCAGTGCTTAACTGCAAGGCCTGAACGCGGGGCAACACGTCCGTAGCAACCCTCA 787319 Query 5765 GG 5766 || Sbjct 787318 GG 787317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430052796165872