Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19 140 5e-29 seq40 136 6e-28 >seq19 Length=1155537 Score = 140 bits (154), Expect = 5e-29 Identities = 191/263 (73%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | |||||| || |||||||||||||| || ||||||||||| Sbjct 979243 GCCAAGCGCCATCGTAAAGTTCTTCGTGACAACATCCAAGGAATAACGAAGCCAGCTATT 979184 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || ||| | | ||| || |||| || || | | Sbjct 979183 CGTCGTCTAGCTCGGCGAGGTGGTGTGAAGAGAATAAGCGGACTGATCTACGAGGAAACT 979124 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | ||| | || ||||| | | ||| ||| ||| ||| | || |||| || Sbjct 979123 CGCGGTGTACTCAAAGTCTTCTTGGAAGGCGTCGTCCGTGACGCTGT-GAC-ATACTGCG 979066 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || ||||| ||||| || || | ||||| |||| || || |||||||| |||| Sbjct 979065 AGCATGCCAAACGAAAGACCGTTACTGCAATGGACGTCGTGTACGCCTTGAAACGACAAG 979006 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 | |||| || || ||||| ||| Sbjct 979005 GTCGTACAATCTACGGTTTCGGA 978983 Score = 136 bits (150), Expect = 6e-28 Identities = 190/263 (72%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | |||||| || |||||||||||||| || ||||| ||||| Sbjct 1033478 GCAAAGCGTCACCGTAAAGTTCTTCGTGACAACATCCAAGGAATAACGAAGCCGGCTATT 1033419 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || ||| | | || || | || || || | | Sbjct 1033418 CGTCGTCTAGCTCGGCGAGGTGGCGTGAAGAGAATAAGCGGTCTGATTTACGAGGAAACT 1033359 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | ||| ||||| ||||| | | |||| | | ||| ||| | || |||| || Sbjct 1033358 CGCGGTGTGCTGAAGGTCTTCTTGGAAGGCGTTGTTCGTGACGCTGT-GAC-ATACTGCG 1033301 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || ||||| ||||| ||||| | ||||| |||| || || |||||||| |||| Sbjct 1033300 AACATGCCAAACGAAAGACCGTCACTGCTATGGACGTCGTGTACGCCTTGAAACGACAAG 1033241 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 | |||| || || ||||| ||| Sbjct 1033240 GTCGTACAATCTACGGTTTCGGA 1033218 >seq40 Length=417382 Score = 136 bits (150), Expect = 6e-28 Identities = 190/263 (72%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | |||||| || |||||||||||||| || ||||| ||||| Sbjct 299653 GCCAAGCGTCATCGTAAAGTTCTTCGTGACAACATCCAAGGAATAACGAAGCCTGCTATT 299594 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || ||| | | || || |||| || || | Sbjct 299593 CGTCGTCTAGCTCGGCGAGGTGGTGTGAAGAGAATAAGCGGTCTGATCTACGAGGAAACG 299534 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 || | ||| |||| ||||| | | |||| ||| || ||| | || |||| || Sbjct 299533 CGCGGTGTGCTGAAAGTCTTCTTGGAAGGCGTTGTCCGAGACGCTGT-GAC-ATACTGCG 299476 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || ||||| ||||| ||||| | ||||| |||| || || |||||||| |||| Sbjct 299475 AGCATGCCAAACGGAAGACCGTCACTGCTATGGACGTCGTGTACGCCTTGAAACGACAAG 299416 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 | |||| || || || || ||| Sbjct 299415 GTCGTACAATCTACGGCTTCGGA 299393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074920222058