Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq20 136 5e-27 seq5 87.8 2e-12 >seq20 Length=1136993 Score = 136 bits (150), Expect = 5e-27 Identities = 240/349 (69%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || || ||| ||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 122945 ATGAGCTCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATC 122886 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 |||||||| || |||||||| || ||||| || || ||||| || | |||| || Sbjct 122885 GAAGCGAAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCA 122826 Query 33460 CCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 33514 | | | || | || ||| ||||| | ||||||||||||||||||| || | Sbjct 122825 C--TGAATGGTGACTTCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAA 122768 Query 33515 CACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33574 | || || || || || || || || || || || || |||| || | Sbjct 122767 CGCACGGAATGGTCTCGATAGCGTTGAACAGGCGGTAACGCTCCGCTTCGTCTTGAATGT 122708 Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634 | || || |||| || |||||||||||||| |||||||| || ||||| || || || | Sbjct 122707 ACGTGTCAATCAGGAGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGC 122648 Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 |||| || || | |||||| || | ||| | ||| | |||| ||||| Sbjct 122647 CGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCTGAGAAAAGCGTTC 122599 >seq5 Length=2343098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||||||||||||| || |||||| ||| |||||| || || | || | Sbjct 1062951 TCCACCCGTAAAAATGCATAGAAGTAAGTTTGCCATAGTTCGGATGAGCCATGTATATGT 1062892 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||||| ||||| ||||||||||| | || |||||||| | ||||| || Sbjct 1062891 TAAGGGATTGCGACTGATCAATGAAGGCTCCACGATCCGCAGCCATATCGATGATTACCT 1062832 Query 62182 TTTGTGGAATTTCCCAAA 62199 | || ||||||||||||| Sbjct 1062831 TCTGCGGAATTTCCCAAA 1062814 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 63513 |||||||| || |||| |||||| | | |||| | || ||||| || || ||| Sbjct 1057377 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 1057320 Query 63514 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA 63573 | || || | ||||| ||| | ||| || ||||| ||||| ||||| || | ||| Sbjct 1057319 TTGAAATGATCGCGCACTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCTTTCA 1057260 Query 63574 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 63633 | | |||||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 1057259 TTGTGAGTAGAAAGCAACTACTCAGCTGTGGTTTGCAAGTTCCAGAGTTAAAAAGGGTAG 1057200 Query 63634 GAGAAGCGTGCGTAAACCATTTTTCAGA 63661 | || ||||| |||||||||||||| || Sbjct 1057199 GCGAGGCGTGGGTAAACCATTTTTCTGA 1057172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944817226960