Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq20 104 6e-17 >seq20 Length=1136993 Score = 104 bits (114), Expect = 6e-17 Identities = 152/209 (73%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAA 22476 ||||||| | ||||||| ||||| |||||||| || |||||| | |||| ||| Sbjct 122755 ACCATTCCGTGCGTTAAGAAGAAGGCCGATTGGGCTCTACGATGGATCGCGGACAA-GAA 122813 Query 22477 CGTT--CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTG 22534 || ||||| || || || | |||||||| | ||||||||||| |||||||| Sbjct 122814 -GTCACCATTCAGTGATCGACTAGTAGCATTTGCCGCCGTTGAAGGCATATTCTTTTC-- 122870 Query 22535 GAGCATTTT--GTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTT 22592 | ||| ||| | | ||||| |||||||| ||||||| ||||||| ||||| || || Sbjct 122871 GGGCAGTTTCGCTTCGATCTTCTGGCTAAAGAAACGTGGTCTTATGCCAGGTCTCACTTT 122930 Query 22593 TTCAAATGAGTTAATTAGCCGAGATGAGG 22621 | |||||| | || ||||||||||| Sbjct 122931 TAGCAATGAGCTCATCTCCCGAGATGAGG 122959 Score = 84.2 bits (92), Expect = 6e-11 Identities = 107/148 (72%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 ||||| || || | |||||| | || || |||||||| ||||||||||||||||||| | Sbjct 123244 AATCCGTTCGACTTTATGGAAATGATATCGCTTGAAGGTAAGACCAATTTCTTCGAAAGA 123303 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATGATAGTTCAAAACAC 22977 | || || ||||| ||||| || || |||| | | ||| | ||| ||| Sbjct 123304 AAGGTGGGCGAATATCAAAAGTGCGGCGTAATGGGCGGCTACAATCAGAGT------CAC 123357 Query 22978 GGATTTACATTAGATGAAGAATTTTAAT 23005 | || || ||||||||||| ||||||| Sbjct 123358 GTTTTCACTTTAGATGAAGACTTTTAAT 123385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348490039292