Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq91 120 2e-22 seq29 118 7e-22 seq49 113 3e-20 seq25 113 3e-20 seq155 105 4e-18 seq24 104 2e-17 seq117 100 2e-16 seq17 98.7 7e-16 seq30 96.9 2e-15 seq57 91.5 1e-13 >seq91 Length=47874 Score = 120 bits (132), Expect = 2e-22 Identities = 84/96 (88%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||||||||||||||||||||||||||||| ||||||||||| | ||||| | Sbjct 9572 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTG 9513 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| |||||||||||||||||||||||||||| Sbjct 9512 TTGATCTATTCATGCGCGTCACTAATTAGATGACGA 9477 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||||||||||||||||| |||||||||||| ||||||||| | | ||||| || Sbjct 29972 AAGCCCGTTCCCTTGGCTGCGGTTTCGCTAGACAGTAGATAGCGACAGTAGGAATCTTGT 29913 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 29912 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 29878 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||||| | ||||||||||| | ||||| || Sbjct 34593 AAGCCCGTTCCCTTGGCTGTTGTTTCGCTAAACAGTAGATAGGGACAGTAGGAATCTTGT 34534 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| || |||||||| ||||||||||||||| Sbjct 34533 TGATCGATTTATGCGCGTGCCTAATTAGATGACGA 34499 >seq29 Length=829256 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||||||||||||||| ||||||||||| | ||||| || Sbjct 468897 AAGCCCGTTCCCTTGACTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 468956 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 468957 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 468991 >seq49 Length=347695 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| |||||||||||||||| ||||||||||| | ||||| || Sbjct 299494 AAGCCCGTTCCCTTGACTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 299435 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||| ||||||||| Sbjct 299434 TGATCCATTCATGCGCGTCACTAATCAGATGACGA 299400 >seq25 Length=848271 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||| ||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 552238 AAACCCATTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 552297 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 552298 TGATCCGTTCATGCGCGTCACTAATTAGATGACGA 552332 >seq155 Length=4635 Score = 105 bits (116), Expect = 4e-18 Identities = 75/86 (87%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25911 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTT 25965 ||||||||||||||||||||||| ||||||||||| | ||||| ||| |||| || Sbjct 4635 CCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGTTGATCCATT 4576 Query 25966 CATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||| Sbjct 4575 CATGCGCGTCACTAATTAGATGACGA 4550 >seq24 Length=829597 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| ||||| || |||||||| | ||||| || Sbjct 501271 AAGCCCGTTCCCTTGGCTGTGGTTTCACTAGACAGCAGATAGGGACAATAGGAATCTTGT 501330 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||| | ||||| Sbjct 501331 TGATCCATTCATGCGCGTCACTAATTATACGACGA 501365 Score = 102 bits (112), Expect = 5e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 ||||| || || | ||||||||||| | ||| | |||||| |||||| ||||||| | Sbjct 293472 CCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCC 293413 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || || |||| ||||| || ||| ||||||||||| || ||||| || || ||| Sbjct 293412 TTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAAG 293353 Query 38298 GTTTTCACGAATATCTGCATG 38318 || || ||||| ||||||||| Sbjct 293352 GTCTTGACGAAAATCTGCATG 293332 Score = 82.4 bits (90), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 9/91 (10%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTT-CGCTAGATAGTAGATAGGGGGTAATCTCGTTAAT 25960 ||||||||| |||||||||| ||| ||||||| |||| |||| |||| || Sbjct 750557 AAGCCCGTTTTCTTGGCTGTGCTTTTCGCTAGACAGTATG--------AATCACGTTGAT 750506 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||||||||||||||||||||||| Sbjct 750505 CCATTCATGCGCGTCACTAATTAGATGACGA 750475 >seq117 Length=26990 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | || || || Sbjct 12433 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAATAGGAACCTTGT 12374 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | || | || ||| ||||||||| ||||||||||| Sbjct 12373 TGATTCATTTATGTGCGTCACTAGTTAGATGACGA 12339 >seq17 Length=1322386 Score = 98.7 bits (108), Expect = 7e-16 Identities = 75/90 (83%), Gaps = 8/90 (9%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATC 25961 ||||||||||| |||||||||||||||||||| |||| | ||||| ||| ||| Sbjct 772972 AAGCCCGTTCCATTGGCTGTGGTTTCGCTAGACAGTA--------GGAATCTTGTTGATC 773023 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||||||||||||||| |||||||||||| Sbjct 773024 CATTCATGCGCGTCACTGATTAGATGACGA 773053 >seq30 Length=737169 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||| ||||||||||||||||| || ||||||| ||| || ||||| | Sbjct 417691 AAGCCCATTCCATTGGCTGTGGTTTCGCTGGAGAGTAGATTGGGACGGCGGGAATCTTCT 417750 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATAT 25994 | |||| ||||||||| ||||||||||||| |||| || Sbjct 417751 TGATCCATTCATGCGCATCACTAATTAGATAACGAGAT 417788 >seq57 Length=263220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | | ||| | Sbjct 234119 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGACTCTTGC 234178 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| | | ||||| ||||| ||||| Sbjct 234179 TGATCCATTCATGAGGGCCACTAGTTAGACGACGA 234213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945950856286