Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20 147 3e-30 seq5 86.0 8e-12 >seq20 Length=1136993 Score = 147 bits (162), Expect = 3e-30 Identities = 239/343 (70%), Gaps = 7/343 (2%) Strand=Plus/Minus Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || ||| ||| ||||| || ||||| || ||||| || || ||||| || || || || Sbjct 122939 TCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTTAGCCAGAAGATCGAAGCG 122880 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822 || || |||||||| || ||||| || || ||||| || | |||| || | | | Sbjct 122879 AAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCTACTAGTCGATCAC--TGA 122822 Query 32823 CCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 32877 || | || ||| ||||| | ||||||||||||||||||| || || || | Sbjct 122821 ATGGTGACTTCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCACG 122762 Query 32878 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 32937 | || ||||| ||||| || || || || || |||| || || || | Sbjct 122761 GAATGGTCTCGATAGCGTTGAACAGGCGGTAACGCTCCGCTTCGTCTTGAATGTACGTGT 122702 Query 32938 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 32997 |||||| || |||||||||||||| |||||||| || ||||| ||||| || ||||| | Sbjct 122701 CAATCAGGAGGCTATACATTTCCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAA 122642 Query 32998 AGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||| | |||||| || | ||| | ||| | |||| ||||| Sbjct 122641 AGCAGCGAGCCTCTGTCACCTGAATTTCCTGAGAAAAGCGTTC 122599 >seq5 Length=2343098 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 63311 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 63368 |||||||| || |||| |||||| | | |||| | || ||||| || || ||| Sbjct 1057377 ATATAGCTCCCGGTGGCTCGAATAGAATGGACGTTGA--GCCCAATTCCTCCGGCATTTT 1057320 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 63428 | || || | ||||| ||| | |||||| ||||| ||||| || || || | ||| Sbjct 1057319 TTGAAATGATCGCGCACTCTTTGAGCGTATCGTAGATTCCCTCAATGCTGTCCGCTTTCA 1057260 Query 63429 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 63488 | | |||||||| || ||| || || | | |||||| | ||||| | ||||| Sbjct 1057259 TTGTGAGTAGAAAGCAACTACTCAGCTGTGGTTTGCAAGTTCCAGAGTTAAAAAGGGTAG 1057200 Query 63489 GAGAAGCGTGAGTAAACCATTTTTCAGA 63516 | || ||||| |||||||||||||| || Sbjct 1057199 GCGAGGCGTGGGTAAACCATTTTTCTGA 1057172 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||||||||||||| || |||||| ||| |||||| || || | || | Sbjct 1062951 TCCACCCGTAAAAATGCATAGAAGTAAGTTTGCCATAGTTCGGATGAGCCATGTATATGT 1062892 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||||| ||||| ||||||||||| | || |||||||| | || || || Sbjct 1062891 TAAGGGATTGCGACTGATCAATGAAGGCTCCACGATCCGCAGCCATATCGATGATTACCT 1062832 Query 62037 TTTGTGGAATTTCCCAAA 62054 | || ||||||||||||| Sbjct 1062831 TCTGCGGAATTTCCCAAA 1062814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629576357600