Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 3e-15 >seq24 Length=829597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| || ||| | || || | ||||||||| | || Sbjct 295613 AATGCAAATATTTGTCAAGACATTGACAGGCAAAACTATAACCCTTGAAGTGGAGCCCTC 295672 Query 25058 TGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || |||| || | || |||||||| || ||||| ||||| | Sbjct 295673 GGACACTATCGACAACGTGAAAGCGAAGATACA-GGACAAAGAGGGAATTCCTCCTGATC 295731 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | ||||| | |||||||| || Sbjct 295732 AGCAGCGTTTGATTTTTGCTGG 295753 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||||| ||| | ||||| | ||||| ||| |||| Sbjct 295045 ATGCAAATCTTTGTGAAAACACTGACCGGAAAAACAATCACGTTGGAAGTCGAGCCGTCA 295104 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| | ||| | || | ||| || || || || || || ||||| || Sbjct 295105 GATACGATCGAGAACGTAAAGACGAAGATTCAA-GATAAGGAGGGCATACCGCCTGATCA 295163 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAA 25145 |||||| | ||||||||||| |||||| Sbjct 295164 ACAGCGCCTGATTTTTGCCGGTAAACAA 295191 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| || || | || || | ||||||||| | || Sbjct 294762 AATGCAAATTTTTGTGAAAACTTTGACTGGCAAGACAATAACGCTGGAAGTGGAGCCCTC 294821 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || |||| || |||| ||| || || ||||| ||||| || || | Sbjct 294822 GGACACTATTGAAAACGTGAAAGCCAAAATTCAG-GATAAGGAAGGCATTCCGCCAGATC 294880 Query 25117 AACAGCGGATTATTTTTGCCGGCAA 25141 |||| || | ||||||||||| || Sbjct 294881 AACAACGCTTAATTTTTGCCGGTAA 294905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326383957390