Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq20 174 2e-38 >seq20 Length=1136993 Score = 174 bits (192), Expect = 2e-38 Identities = 253/356 (71%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || ||||| || || | ||||||||| || || | |||||| | || || |||||||| Sbjct 122957 TCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTT 122898 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || ||||| ||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 122897 AGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCT 122838 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCT---GATCCATTTTAAAGCCCAATCG 93292 || | || || || || || || || ||||||| || |||||||||| Sbjct 122837 ACTAGTCGATCACTGAA---TGGTGACTTCTTGTCCGCGATCCATCGTAGAGCCCAATCG 122781 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCC 93352 || || ||||||| || || | || ||||||||||| || ||| | ||||| | Sbjct 122780 GCCTTCTTCTTAACGCACGGAATGGTCTCGATAGCGTTGAACAGGCGGTAACGCTCCGCT 122721 Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 ||| | ||||| || || || | || ||||||||| || || | ||||| || Sbjct 122720 TCGTCTTGAATGTACGTGTCAATCAGGAGGCTATACATTTCCGAGTGAATGTTCTCTATG 122661 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 || |||||||| ||||| || || | ||| || || | ||| | ||| |||||||| Sbjct 122660 GCTATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCTGAATTTCCTGAGAAAA 122605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 ||||| || ||||| || || || ||||| | || | | || || ||||| || | Sbjct 122525 ACTATTCCGTCGGAAGCCGCGAAGAAAGCGAGTACGTACGAGATGAAGTGTTTTTCGTTC 122466 Query 93551 TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610 || ||||| |||||||||| | ||| | || || || || ||||| |||||| Sbjct 122465 GGGTTCAGCTTTTCCCAATCGGTCATGTCTCTGCTCAGGTCAACCTCCTCGACGGTCCAA 122406 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATC-CCATATGTCTTGATATTGAATTGGAAATAT 93669 || || ||||| ||||||||||| || | ||| ||||| ||||||||| || || | Sbjct 122405 AATGAAGCTTCGGCTTTTTTGTA-GTAGCTCCAAATGTCCGGATATTGAAGAGGCAACAG 122347 Query 93670 GACAAAACGATTAGGGTT 93687 |||||||| || || || Sbjct 122346 TACAAAACGTTTTGGATT 122329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858670007440