Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq24 100 2e-16 >seq24 Length=829597 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || || || | || || ||||| || | | Sbjct 293914 ATGCAAATTTTTGTCAAAACATTGACAGGCAAGACCATTACCCTCGAAGTAGAGCCGTCG 293973 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| |||||||||||||||||||||||||| || || || Sbjct 293974 GACACCATTGAGAATGTTAAAACTAAAATTCAAGACAAGGAGGGTATTCCGCCGGACCAG 294033 Query 22339 CAACGTCTTATATTTGCCGGCAAAC 22363 || || ||||| || ||||| |||| Sbjct 294034 CAGCGGCTTATCTTCGCCGGTAAAC 294058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || |||||||| |||||| | || | ||||||||| || | Sbjct 293333 ATGCAGATTTTCGTCAAGACCTTAACCGGCAAAACGATAACATTAGAAGTGGAACCCTCG 293392 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || | | || ||||||||| |||||||| || ||||| || |||||| Sbjct 293393 GACACTGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATTCCCCCTGATCAA 293452 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | || || ||||| Sbjct 293453 CAACGGTTGATCTTCGCCGG 293472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || || || || | || || |||||||| || | Sbjct 294763 ATGCAAATTTTTGTGAAAACTTTGACTGGCAAGACAATAACGCTGGAAGTGGAGCCCTCG 294822 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| |||||||| || ||||| || ||||| || |||||| Sbjct 294823 GACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGCATTCCGCCAGATCAA 294882 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| | || |||||||| || Sbjct 294883 CAACGCTTAATTTTTGCCGGTAA 294905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726434676890