Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq24 118 2e-21 >seq24 Length=829597 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | | |||||| || || ||||||||||||||||| ||||| |||||| Sbjct 293472 CCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCC 293413 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||| | ||||| | | ||| ||||| || || || ||||| || || | | Sbjct 293412 TTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAAG 293353 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 293352 GTCTTGACGAAAATCTGCAT 293333 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || ||||| || || || | ||||| || || || ||||| ||||| ||||||||| Sbjct 295190 TGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAATC 295131 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || | ||| ||| |||||| || |||| | || |||||||| ||||| |||||||| Sbjct 295130 TTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCCG 295071 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || || || ||||| Sbjct 295070 GTCAGTGTTTTCACAAAGATTTGCAT 295045 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || |||| || || || || || || |||||||| ||||||||||||| | Sbjct 293767 CCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTGTC 293708 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| || |||||||| | | || ||||||| || || ||||| || || || Sbjct 293707 TTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAGC 293648 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || ||||||||||| Sbjct 293647 GTTTTCACAAATATCTGCAT 293628 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || || | || ||||| || ||||| || |||||||||||||| || Sbjct 294056 TTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTTTA 293997 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || || ||| |||||||| | | |||||||| | ||| ||||| || || || Sbjct 293996 GTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTGTC 293937 Query 68439 AGGGTCTTGACGAATATCTGCATT 68462 | || ||||| || || |||||| Sbjct 293936 AATGTTTTGACAAAAATTTGCATT 293913 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | | || || || || |||||||| || ||||| || || ||| Sbjct 294621 TTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTTT 294562 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || ||| || || || |||| | || ||||| | |||||| ||||| || ||| Sbjct 294561 GTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGTG 294502 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| |||||||||||||| Sbjct 294501 AGCGTCTTAACGAATATCTGCAT 294479 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || || || ||||||||||| || |||||||| || | Sbjct 293191 CCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTC 293132 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | ||| | | || ||||| | || ||||||||||||||||| Sbjct 293131 TTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGT 293072 Query 68442 GTCTTGACGAATATCTGCATT 68462 || || ||||| ||||||||| Sbjct 293071 GTTTTCACGAAAATCTGCATT 293051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618874794320