Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 2e-12 >seq24 Length=829597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||| || |||| || ||||| || || ||||| || ||||| || || ||||||| Sbjct 293769 TACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTG 293710 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || | | |||| |||||||| | || || |||| || | ||||||||||||| Sbjct 293709 TCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCA 293650 Query 114361 GAGTTTTTACAAAAATCTGCATG 114383 | ||||| ||||| ||||||||| Sbjct 293649 GCGTTTTCACAAATATCTGCATG 293627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 ||| ||| |||| | || ||||| || || ||||||||||| ||||| ||| ||| Sbjct 293473 ACCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTTTGC 293414 Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 |||| | ||||| ||||| | || ||| || || | || | |||||||||||| | Sbjct 293413 CTTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAA 293354 Query 114362 AGTTTTTACAAAAATCTGCATG 114383 || || || |||||||||||| Sbjct 293353 GGTCTTGACGAAAATCTGCATG 293332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 ||| ||| |||| |||||||| || ||||| |||||||||||||| || ||| || | Sbjct 293192 ACCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATT 293133 Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 || | | ||||| | ||||| | || || || | || | ||||| || || || Sbjct 293132 CTTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAG 293073 Query 114362 AGTTTTTACAAAAATCTGCATGGCTT 114387 ||||| || ||||||||||| |||| Sbjct 293072 TGTTTTCACGAAAATCTGCATTGCTT 293047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132833161272