Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20 172 1e-37 >seq20 Length=1136993 Score = 172 bits (190), Expect = 1e-37 Identities = 241/333 (72%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| |||||||| ||||||||||| ||||||||||||||| | ||||| || |||| Sbjct 122629 GAGGCTCGCTGCTTTTACGGCTTCCAAATAGCCATAGAGAACATTCACTCGGAAATGTAT 122688 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||| | |||||||||| | || | |||||| || | |||||||| || Sbjct 122689 AGCCTCCTGATTGACACGTACATTCAAGACGAAGCGGAGCGTTACCGCCTGTTCAACGCT 122748 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 || ||||| || || ||| | ||||||||||| || ||||| || ||||||| | | Sbjct 122749 ATCGAGACCATTCCGTGCGTTAAGAAGAAGGCCGATTGGGCTCTACGATGGATCGCG-GA 122807 Query 42681 CCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTT 42739 | || | || | ||| | || | || ||||| ||| ||||||| || ||||| ||||| Sbjct 122808 CAAGAAGTCACCATTCAGTGATCGACTAGTAGCATTTGCCGCCGTTGAAGGCATATTCTT 122867 Query 42740 CTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCA 42798 |||||| ||||| || ||||||||||| ||| | | | ||| ||||| || |||| Sbjct 122868 TTCGGGCAGTTTCGCTTCGATCTTCTGGCTAAAG-AAACGTGGTCTTATGCCAGGTCTCA 122926 Query 42799 CCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || |||||| | | || |||| Sbjct 122927 CTTTTAGCAATGAGCTCATCTCCCGAGATGAGG 122959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335587902560