Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq24 84.2 2e-11 >seq24 Length=829597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 33981 TTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAAT 34040 ||| || |||||||| ||||||||||| ||||| ||| | || ||| || || ||| Sbjct 295191 TTGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAAT 295132 Query 34041 TTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGTTATTGTTTTTC 34099 || ||| | | ||| | |||| | | ||| ||| | ||| |||||||||| Sbjct 295131 CTTCGTCTTTACGTT-CTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTC 295073 Query 34100 CGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||||||||||||||||||||| Sbjct 295072 CGGTCAGTGTTTTCACAAAGATTTGCAT 295045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060919205412