Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq24 104 6e-17 >seq24 Length=829597 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 |||||||||||||||||||| ||| || ||| || ||||||||||| || ||||| Sbjct 293191 CCTGCGAAGATCAGACGCTGCTGA---TCCGGGGGAATGCCTTCTTTATCTTGAATTTTA 293135 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || ||| || || ||||||||||| || || || || || Sbjct 293134 TTCTTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTG 293075 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||||||| Sbjct 293074 AGTGTTTTCACGAAAATCTGCATT 293051 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| || ||||||||| | || || ||||||||||| || ||||| | Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || |||| ||| || ||| ||||| ||||| || ||||| || || ||| Sbjct 294276 TTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAGA 294217 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| Sbjct 294216 GTTTTCACAAATATCTGCAT 294197 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||| ||||| ||||| | ||| |||||||| |||| ||| || || Sbjct 294588 GGAATGCCCTCTTTGTCCTGTATTTTTGTTTTAACGTTTTCAATAGTATCTGACGGCTCC 294529 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| || ||||| || || ||||| |||||||||||||| Sbjct 294528 ACTTCGAGGGTGATTGTTTTCCCAGTGAGCGTCTTAACGAATATCTGCAT 294479 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| || ||||| || ||||| ||||| || ||||||||||| | ||| | || Sbjct 295442 TGGGATACCCTCTTTGTCTTGGATCTTCGCCTTTACGTTTTCTATGGTATCCGAAGGCTC 295383 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||||| ||||| || || |||||||| |||||| Sbjct 295382 CACTTCCAGCGTAATAGTCTTCCCTGTCAGCGTTTTCACGAATATTTGCATT 295331 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| | || ||||| ||||| ||||| || |||||| Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || |||| || | || ||||| || || || || || || |||| Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 288454 GTCTTGACGAATATCTGCATT 288474 |||||||| ||||| |||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || ||||| ||| ||||| ||| ||||| ||||| || || || Sbjct 293767 CCGGCAAAGATTAGTCGCTGCTGA---TCTGGAGGGATCCCTTCCTTATCTTGAATCTTT 293711 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | |||||||| || || | ||| || || ||||| ||||| || || || |||||| Sbjct 293710 GTCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTC 293651 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| Sbjct 293650 AGCGTTTTCACAAATATCTGCAT 293628 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| |||||||| ||||| |||||||||||||| |||| || | || Sbjct 294872 GGAATGCCTTCCTTATCCTGAATTTTGGCTTTCACGTTTTCAATAGTGTCCGAGGGCTCC 294813 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || ||||| || |||| ||| || || || || |||||| Sbjct 294812 ACTTCCAGCGTTATTGTCTTGCCAGTCAAAGTTTTCACAAAAATTTGCATT 294762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649775017468