Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 2e-12 >seq24 Length=829597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || |||||||||||||| || ||||| || || || ||||| ||||| Sbjct 294056 TTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTTTA 293997 Query 64361 TGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 || ||| ||| | || || |||| || ||||| | || | ||||||||| || Sbjct 293996 GTTTTAACATTCTCAATGGTGTCCGACGGC-TCTACTTCGAGGGTAATGGTCTTGCCTGT 293938 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 ||| ||||| || |||||||||||| Sbjct 293937 CAATGTTTTGACAAAAATTTGCATT 293913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| | || || ||||| || || || ||||| |||||||| ||||||||||| | Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 64364 TTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421 || ||| ||| | |||| ||| || |||||||| | || | |||||||| || | Sbjct 294276 TTCACATTCTCAATAGTAT--CCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAA 294219 Query 64422 AAGTTTTTACGAAAATTTGCAT 64443 |||||| || || || ||||| Sbjct 294218 GAGTTTTCACAAATATCTGCAT 294197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642888858640