Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq24 82.4 8e-11 >seq24 Length=829597 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| |||||||| || ||||| || || |||||||| || ||||| | || | | Sbjct 293184 AGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTCTTCACAT 293125 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 ||| | | ||||| || ||| || |||| ||| | ||||| || || || ||||| | Sbjct 293124 TTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGTGTTTTCA 293065 Query 138602 CAAAAATCTGCATGGCTT 138619 | ||||||||||| |||| Sbjct 293064 CGAAAATCTGCATTGCTT 293047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260501796320