Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq24 109 5e-19 >seq24 Length=829597 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||| || ||||| ||||| |||||||||||||||||||||||||| | Sbjct 293191 CCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTC 293132 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | | |||||| | ||| |||||||| |||| ||||| || || || Sbjct 293131 TTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGT 293072 Query 45321 GTTTTTACAAAAATTTGCATCGC 45343 ||||| || ||||| ||||| || Sbjct 293071 GTTTTCACGAAAATCTGCATTGC 293049 Score = 104 bits (114), Expect = 2e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || ||| | || | || ||||||||||||||||| || || || |||||||||| Sbjct 294058 GTTTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTT 293999 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 | |||| | | | || | |||||| || | ||| |||||||| |||| || ||||| Sbjct 293998 TA-GTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCT 293940 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| |||||||||||||| Sbjct 293939 GTCAATGTTTTGACAAAAATTTGCAT 293914 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || || ||||| || || |||||||||||||| ||||| |||||||| ||| | | Sbjct 294893 ATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTGGCTTTCACGTTT 294834 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||| || | ||| ||||| || || | || ||||| || | |||||| ||| Sbjct 294833 TCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTCAAAGTTTTCACA 294774 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 294773 AAAATTTGCAT 294763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTA 45273 ||| ||||| || || || || ||||| ||||||||||| ||| || | || | || | Sbjct 293753 TCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTGTCTTCA-CGTTATCAA 293695 Query 45274 CGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAA 45333 ||||||||| | ||| ||||| || || | ||||||||||| || ||||| ||||| | Sbjct 293694 TGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAGCGTTTTCACAAATA 293635 Query 45334 TTTGCAT 45340 | ||||| Sbjct 293634 TCTGCAT 293628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||| ||||| || || || ||||||||||| || || ||||||||| Sbjct 293472 CCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTTTGCC 293413 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 || | || | || || ||||| || | || ||||| | || | |||||||||||||| Sbjct 293412 TTTA-CGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGTTAA 293354 Query 45320 AGTTTTTACAAAAATTTGCAT 45340 || || || ||||| ||||| Sbjct 293353 GGTCTTGACGAAAATCTGCAT 293333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001471087760