Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 2e-13 >seq3 Length=2787444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 175899 TTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATT 175958 |||||||||||||||||| || ||||| ||||| ||| ||||| || || |||| Sbjct 2091522 TTGTGAAGATGTACCTCGCACTAGCGGCATCCTTGCCGCCCTGCAGACGAGTACCGAATT 2091581 Query 175959 GACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGA 176018 | ||| ||| || | ||||||||||| ||||| | |||| | ||||| || | Sbjct 2091582 GGCCAACGGGCAGCAGTAAGTTGATATTGTTGCTGCCCACAAAGTCGTGAGCCAAATTTA 2091641 Query 176019 CAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACG 176078 ||| || || ||| |||| |||||||| || || || | || || || | Sbjct 2091642 TAATTGTTCCCATAAGGCTTGCTTCGCCGTGATGATATGCGGAAATTTCAGCAACGGAAC 2091701 Query 176079 CCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGA 176138 | |||||||| ||||| |||| || |||| || | |||||| | |||| | Sbjct 2091702 CGGCCAACTGGGCCACTTTCACTTCTCGCTTGTCATTACGCTTGAAGCAAGTGAACATAA 2091761 Query 176139 CCTTTCTCTG 176148 ||||||| || Sbjct 2091762 CCTTTCTTTG 2091771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504853334960