Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 7e-14 >seq5 Length=2343098 Score = 93.3 bits (102), Expect = 7e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| || ||||||| |||| || ||| | || ||| || | | ||||| ||| Sbjct 1062623 CTGAAATTCGCCGGACAAGACCCTCCGCGTGTAGAGATTGGACGTATACGCTTCGATCGC 1062564 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| || || ||||| ||| || || ||||| ||||| | |||| || Sbjct 1062563 CTCGTTGTTGCCCAAGATTTGAGCTGTGGACGCAGTTGGCATAGGAGCAACAAGCAACGA 1062504 Query 204316 GTTGCGCACACCGTAT 204331 |||||||||||| ||| Sbjct 1062503 GTTGCGCACACCATAT 1062488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152158531360