Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 2e-12 >seq24 Length=829597 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 || || ||||| || |||| |||||| || || | ||| | || |||||| || ||| Sbjct 295190 TGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAATC 295131 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 ||| |||| | || | | ||| || || || || |||| |||||| ||||| || Sbjct 295130 TTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCCG 295071 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| |||||||||||||| Sbjct 295070 GTCAGTGTTTTCACAAAGATTTGCAT 295045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236237963120