Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq20 228 8e-55 >seq20 Length=1136993 Score = 228 bits (252), Expect = 8e-55 Identities = 638/1003 (64%), Gaps = 116/1003 (12%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| | ||||||||||||||||||||| | || || ||||| || || || || Sbjct 123336 CATTACGCCGCACTTTTGATATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTC 123277 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | || || | |||||| || || || || | | ||||| |||| ||| | Sbjct 123276 AAGCGATATCATTTCCATAAAGTCGAACGGATTCTCAGAATTGTATATCTTGTTGCAGTC 123217 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 || || || | | | ||||||||| |||| |||||| | |||| ||||||||| Sbjct 123216 CAATTCAACCAATAAACGATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATT 123157 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | || ||||| || |||||||| ||||| |||||| ||| ||||||| Sbjct 123156 CATGCCGATCAAGTTGACCGGAAGTGCTTCGGTCAGAAACTCTTGCTCAATGACGACCGC 123097 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 || | | ||| | | | ||| || ||| | | ||| ||| || |||| Sbjct 123096 CTCTCTTATGATCTGCTCGATGCGTTCCTTGCTGGTCTTGTGCTTCAAGTGAGAAAACAG 123037 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTC------------------------------ 132920 || |||||||| || || ||||| |||| Sbjct 123036 CAGACAAGCAAAATCACAGTGCAAACCCTAAAATAAATGCGAAATTTTTAAAAAAAGCAA 122977 Query 132921 --------------GTCCCT-------GGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 || ||| ||| ||||| || ||||| ||||| | || || Sbjct 122976 CAAAGCAATGAATAGTACCTCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGACCTGG 122917 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| || || ||||| || ||||| || || | |||||||||||||||||||| | ||| Sbjct 122916 CATAAGACCACGTTTCTTTAGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAATATGCC 122857 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG-TGGCTTCTTTGCTGGCGATCC 133078 || ||||| || || || || || || || | ||| | || |||||| | | |||||| Sbjct 122856 TTCAACGGCGGCAAATGCTACTAGTCGATCACTGAATGGTGACTTCTTGTCCG-CGATCC 122798 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | || || ||||| |||||||| | || |||||||| || || ||||| ||||| |||| Sbjct 122797 ATCGTAGAGCCCAATCGGCCTTCTTCTTAACGCACGGAATGGTCTCGATAGCGTTGAACA 122738 Query 133139 AACGGA---GTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTT 133195 ||| | | | |||| | | | ||| ||||| || ||| |||||||| Sbjct 122737 GGCGGTAACGCTCCGCTTC---GTCTTGAATGTACGTGTCAATCAGGAGGCTATACATTT 122681 Query 133196 CCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCT 133255 ||||||| | |||||| ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 122680 CCGAGTGAATGTTCTCTATGGCTATTTGGAAGCCGTAAAAGCAGCGAGCCTCTGTCACCT 122621 Query 133256 GCACTTCTTGA----------------------GCGA---------------AACGCTCG 133278 | | ||| ||| |||| |||| ||| Sbjct 122620 GAATTTCCTGAGAAAAGCGTTCAACCTACAAAAGCGACGTCCAGGGATTTCAAACGATCG 122561 Query 133279 --------------------ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318 |||| |||||| || || |||||| || ||||| | Sbjct 122560 CCAGCGGCATAAAAGAGCTTACCAAGTTTTCGAACACTATTCCGTCGGAAGCCGCGAAGA 122501 Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCG 133378 | || || |||| | |||||| || ||||| ||||| ||||| ||| | Sbjct 122500 AAGCGAGTACGTACGAGATGAAGTGTTTTTCGTTCGGGTTCAGCTTTTCCCAATCGGTCA 122441 Query 133379 TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACA 133438 |||| || |||||| |||||||||||||||||||| || || |||||||||||||| Sbjct 122440 TGTCTCTGCTCAGGTCAACCTCCTCGACGGTCCAAAATGAAGCTTCGGCTTTTTTGTAGT 122381 Query 133439 TACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 ||||| ||||||| |||||| | || || | ||||| || Sbjct 122380 AGCTCCAAATGTCCGGATATTGAAGAGGCAACAGTACAAAACG 122338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170886839040