Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq19 125 3e-23 seq51 98.7 4e-15 seq24 96.9 1e-14 >seq19 Length=1155537 Score = 125 bits (138), Expect = 3e-23 Identities = 278/415 (67%), Gaps = 3/415 (1%) Strand=Plus/Plus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| ||||| | ||||| || | || ||||| || || || | ||| |||| ||||| Sbjct 887585 AGGCAAGCCAAAGATTCAGGTGGAATACAAAGGCGAGACCAAGATGTTTACTCCCGAAGA 887644 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 | ||||||| | |||||||||||| || |||||| ||| | ||| | Sbjct 887645 GGTCAGCGCTATGGTATTGGTTAAAATGAAAGAGACGGCAGAAGCTTATTTGGGTAAAAC 887704 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 || | || || || || |||||||| || || ||||||||| | || |||| ||||| Sbjct 887705 CGTGAAGGACGCCGTTATCACTGTTCCGGCCTACTTCAATGATTCTCAGAGGCAGGCAAC 887764 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||| ||||| ||| |||| || ||||| |||||||| || ||||| || || || Sbjct 887765 GAAAGACGCAGGTACCATTTCTGGATTGAATGTCCTTCGAATCATCAATGAGCCGACCGC 887824 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 || ||| | || ||||| | ||| || |||| || | || || | | | Sbjct 887825 TGCCGCTATCGCCTATGG-GTTGGACAA--GAAAGGTACGGGCGAGCGGAACGTACTGAT 887881 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 || || | || || || || ||| || | || |||| || ||||| |||| Sbjct 887882 CTTCGACCTGGGCGGCGGTACCTTCGATGTGTCCATTCTGACAATCGAGGATGGTATATT 887941 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||| ||| | || || ||||||||||| || ||||| || |||| ||| Sbjct 887942 CGAAGTGAAGTCTACGGCGGGCGATACTCATCTTGGCGGTGAGGACTTTGACAAT 887996 >seq51 Length=261480 Score = 98.7 bits (108), Expect = 4e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 ||||| |||| || ||||| | || || || || || ||||||| | || |||||| Sbjct 32676 AAAGGAGAAA--AAGACTTTCTCGCCCGAGGAGATATCGGCTATGGTGTTGACGAAAATG 32619 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 || ||||| || || ||| |||| || || | || || |||| || || Sbjct 32618 AAGGAAACTGCGGAGGCGTATCTTGGCAAGAAGGTCACACACGCTGTGGTTACGGTGCCT 32559 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTT 451398 || |||||||||||||| ||||| || ||||| || |||||||| ||| || ||||| | Sbjct 32558 GCCTATTTCAATGATGCCCAACGACAGGCAACAAAGGATGCAGGTACA-ATCGCTGGCCT 32500 Query 451399 AAATGTTCTTCGAATTATTAATGAACC 451425 || |||||||| || || || ||||| Sbjct 32499 AACCGTTCTTCGGATCATCAACGAACC 32473 >seq24 Length=829597 Score = 96.9 bits (106), Expect = 1e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| |||||||| || || ||||| ||||| || || ||||| | || Sbjct 293051 AATGCAGATTTTCGTGAAAACACTCACGGGAAAAACCATTACGCTCGAAGTTGAGCCGTC 293110 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || |||||| | | || | |||||||||||||| ||||| ||||| || ||||| Sbjct 293111 CGACTCGATTGAAAATGTGAAGAATAAAATTCAAGATAAAGAAGGCATTCCCCCGGATCA 293170 Query 391169 ACAACGTTTAATTTTCTCAGG 391189 || ||| | || ||| |||| Sbjct 293171 GCAGCGTCTGATCTTCGCAGG 293191 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||| ||||||| || || || || || || || || | || Sbjct 294762 AATGCAAATTTTTGTGAAAACTTTGACTGGCAAGACAATAACGCTGGAAGTGGAGCCCTC 294821 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | ||| |||||||| ||||||||||| ||||| || ||||| Sbjct 294822 GGACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGCATTCCGCCAGATCA 294881 Query 391169 ACAACGTTTAATTTT 391183 |||||| |||||||| Sbjct 294882 ACAACGCTTAATTTT 294896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975710653949048