Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq19 251 5e-61 seq51 107 1e-17 seq43 98.7 8e-15 seq3 89.7 4e-12 >seq19 Length=1155537 Score = 251 bits (278), Expect = 5e-61 Identities = 881/1360 (65%), Gaps = 34/1360 (3%) Strand=Plus/Minus Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 |||||||| || | ||| || || ||| | | ||||| ||| | | ||||| Sbjct 888649 TTATCTTTGGTCATCGCTCGCTCGCCTTCGTACACCTGGATCAGCACTCCGGGCTGATTG 888590 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTC----TATC 517485 || |||||||| ||||| ||| ||| || || || || || || | |||| Sbjct 888589 TCGGAATAAGTAGTAAACACTTGGGAAACCTTCGTTGGTATCGTAGTATTACGCTTTATC 888530 Query 517486 AATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 517545 ||| | ||||||| |||||| || ||||||| |||||||| | || || || || Sbjct 888529 AATGCT----GTCATAACACCACCGGCGGTTTCTATGCCAAGAGACAACGGCGTCACGTC 888474 Query 517546 AACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAA 517604 | || | || | ||| | | |||| | | || |||||| |||| || || | Sbjct 888473 CAAAAGCAAAAGGTCTTGCACTGCCTCATGCTTATCGCCTGACAAGA-TAGCCGCCTGTA 888415 Query 517605 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCAT 517664 ||||| || || || || || ||||| ||||| | | | || | | || |||| Sbjct 888414 CCGCAGCCCCGTAAGCGACGGCCTCATCCGGATTGATGCTCTTGTTCAACTCCTTTCCAT 888355 Query 517665 TGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 517723 ||||||| | ||| | || || | ||||| |||||||||| || || ||||| || Sbjct 888354 TGAAAAAGTCTTGCAGCAACTTTTGA-ACCTTCGGAATACGAGTCGAGCCACCAACCAAC 888296 Query 517724 ACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCAACGGG 517782 |||| || ||||||||||| |||||||| || | ||| | | | || |||||||| || Sbjct 888295 ACAACATCGTGCACCTGTGACTTATCCAGCTTGGCATCGCGAAGAGAC-TTTTCAACTGG 888237 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 || | | | | ||||| || | ||||| |||||||| || | ||| | || Sbjct 888236 ATCCAAAGTGGAGCGGAACAAATCGGCGCAAAGCTCTTCGAAACGGGCACGAGTGATCGT 888177 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 517902 | | ||| || || || ||| ||||| |||| ||| || | | |||||| | Sbjct 888176 GGTGTAATAGTCGATGCCCTCGTACAAACTGTCAATTTCTATGCTCGCTTGAGT----GG 888121 Query 517903 AGATAGTGCACGT----TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTG 517958 || || | |||| || || ||||| || ||||| | | | || ||||| | Sbjct 888120 AGCTACTCAACGTTCTCTTGGCTCGTTCGCAAGCTGTACGCAAACGACGCAAGGC--ACG 888063 Query 517959 CTGATT----GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT 518014 |||| || || || | |||| ||| | |||||| || | ||| | || Sbjct 888062 AGGATTTCCCGA--CATGTCCTTCTTATTTTTGCGCTTGAACTCGGCCACAAAGTGGGTA 888005 Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || | ||||| ||||| || ||||| || | | ||||| || | ||||| | ||| Sbjct 888004 ACCATGCGATTGTCAAAGTCCTCACCGCCAAGATGAGTATCGCCCGCCGTAGACTTCACT 887945 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | ||||| || | | || || | ||||| ||| || || |||| || Sbjct 887944 TCGAATATACCATCCTCGATTGTCAGAATGGACACATCGAAGGTACCGCCGCCCAGGTCG 887885 Query 518135 AAAATAAGTACATTCATTTC-TTTGT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 || || ||||| ||| || || | | || || || | ||||| || | ||| | Sbjct 887884 AAGATCAGTACGTTCCGCTCGCCCGTACCT--TTCTTGTCCAACCCATAGGCGATAGCGG 887827 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 |||| || || ||||| || |||| | ||||| | |||| ||| | ||||| |||| Sbjct 887826 CAGCGGTCGGCTCATTGATGATTCGAAGGACATTCAATCCAGAAATGGTACCTGCGTCTT 887767 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || || || ||||| || || || || |||||||| |||||||| || | | Sbjct 887766 TCGTTGCCTGCCTCTGAGAATCATTGAAGTAGGCCGGAACAGTGATAACGGCGTCCTTCA 887707 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | |||||| | |||||| |||||| | |||||||||| || | ||| | | Sbjct 887706 CGGTTTTACCCAAATAAGCTTCTGCCGTCTCTTTCATTTTAACCAATACCATAGCGCTGA 887647 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 | ||| || | | | ||||| || || ||| || | || | ||| || Sbjct 887646 CCTCTTCGGGAGTAAACATCTTGGTCTCGCCTTTGTATTCCACCTGAATCTTTGGCTTGC 887587 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 || || | | || || || ||||| | ||||| || || || ||| ||||| Sbjct 887586 CTCCGTCACTGACCACCTTGAAAGGCCAATGCTTCATGTCAGACTGCACAGCAGCGTCAT 887527 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 | || || || | ||| ||||| || |||| || ||| ||||| | || Sbjct 887526 CGTATCTTCGCCCGATCAGTCGCTTTGCGTCGAAAACGGTGTTGTGAGGATTCAAGGCGA 887467 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 |||| | ||||| ||||| || ||||| || || || ||||| | ||||| || Sbjct 887466 CTTGGTTCTTGGCGGCATCGCCGATCAGTCTCTCCGTGTCCGTAAAAGCCACATAGCTTG 887407 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || ||||| || || || || || || || || || || || |||| || | |||| Sbjct 887406 GCGTGGTGCGGTTGCCCTGGTCGTTGGCTATTATCTCCACCTTGCCATGCTGGAACACAC 887347 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | || ||||| | || || ||||| ||||| |||| ||| Sbjct 887346 CAACGCAACTGTACGTCGTACCTAAGTCAATTCCAACAGC 887307 >seq51 Length=261480 Score = 107 bits (118), Expect = 1e-17 Identities = 308/468 (66%), Gaps = 7/468 (1%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || || | | ||| | || ||||| ||| | |||||||| || || || Sbjct 32473 GGTTCGTTGATGATCCGAAGAACGGTTAGGCCAGCGATTGTACCTGCATCCTTTGTTGCC 32532 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 |||| ||| | ||| || ||||| ||||| || |||| || || | || || | || Sbjct 32533 TGTCGTTGGGCATCATTGAAATAGGCAGGCACCGTAACCACAGCGTGTGTGACCTTCTTG 32592 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 |||| ||| || || |||| |||||||| | || | ||| | || || | || Sbjct 32593 CCAAGATACGCCTCCGCAGTTTCCTTCATTTTCGTCAACACCATAGCCGATATCTCCTCG 32652 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 || || | ||| || ||| | ||| |||| | ||||| | | Sbjct 32653 GGCGAGAAAGTCTTTTTCTCCTTTCCTACGGTTACCTCAACGTGCGGTTTGCC-CGATTG 32711 Query 518441 TT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 518499 || ||| ||||| |||||||| ||| ||| | ||| | ||||| |||| | || Sbjct 32712 TTCAATCACTTTGAATGGCCACATTTTGCGATCGGCTTGTAAACTTTTGTCAGACCATTC 32771 Query 518500 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTTGAT 518558 | ||| || | |||||| || ||||||| ||||| ||||| | || || ||| Sbjct 32772 ACGACCGATCATTCGTTTGGCGTCAAAAACGGTATTTTCGGGATTCGACGTCAACT-GAT 32830 Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTA---AATGAAACATATGATGGAG 518615 ||||| ||||| || || ||| |||| || | | || | || ||||| |||| Sbjct 32831 TCTTGGCCGCATCGCCTATTAGACGTTCACCTTCGGGAGTGAACGCCACGTATGACGGAG 32890 Query 518616 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 518663 | | ||||| ||||| || || |||||||||||||| |||||||| Sbjct 32891 TGATCCGATTGCCTTGGTCGTTGGCAATAATTTCAACGCGACCATTTT 32938 >seq43 Length=385820 Score = 98.7 bits (108), Expect = 8e-15 Identities = 135/187 (72%), Gaps = 14/187 (7%) Strand=Plus/Plus Query 668823 AAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATT 668882 ||||| ||||| ||| | ||||||| | ||||| ||||||||| |||| || Sbjct 375972 AAGTCGCTAAAGCAAAGGCTGAAAG--------GCAAAGAGGGTCGTATTCGAGGCAACC 376023 Query 668883 TGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTG 668942 | ||||||||| | || ||| | || ||| | ||||| || ||| | ||||| ||| ||| Sbjct 376024 TTATGGGAAAAAGAGTTGATTTCTCAGCAAGGACAGTGATCACTCCCGATCCTAATCTTG 376083 Query 668943 CTCTCAATGA--AGTTGG-TGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAA 668999 | || ||| |||||| |||||| | |||||| ||||||||||| | ||||| Sbjct 376084 C---CATTGACCAGTTGGGTGTTCCAAAGACTATTGCCCAAAATCTTACTGTACCCGAAA 376140 Query 669000 TTGTAAC 669006 |||| || Sbjct 376141 TTGTTAC 376147 >seq3 Length=2787444 Score = 89.7 bits (98), Expect = 4e-12 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 671663 TTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCT 671722 || |||||||| | ||||||||||| ||||| | || |||| || ||||||| ||| Sbjct 2406658 TTCTTCTTCCATGCTATGGCAGGTCGAGAAGGATTGATAGATACTGCGGTTAAAACAGCT 2406599 Query 671723 GATACTGGTTATATTCAAAGAAAACTTGTTAAAATGC-TCGAAGATATCAAACAAGAATA 671781 || ||||||||||| ||| | | ||| |||||||| | |||||| | | | || Sbjct 2406598 GAAACTGGTTATATGCAACG-ACGTTTGGTAAAATGCTTGGAAGATTTGTGCCTTCACTA 2406540 Query 671782 TGATGGTACAGTAAGAAATGCAAATGGT 671809 ||||| ||| ||| ||||| || ||||| Sbjct 2406539 TGATGATACGGTACGAAATTCAGATGGT 2406512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780807215272036