Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq19 356 3e-93 seq51 147 3e-30 >seq19 Length=1155537 Score = 356 bits (394), Expect = 3e-93 Identities = 840/1258 (67%), Gaps = 14/1258 (1%) Strand=Plus/Minus Query 6889 CTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 ||| | ||| ||||| ||||| | | || | | ||||||| |||||| ||||| Sbjct 888560 CTTCGTTGGTATCGTAGTATTACGCTTTATCAATGCTGTCATAACACCACCGGCGGTTTC 888501 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 | |||||||||| || ||||||||||| || || |||||||| || | || | | Sbjct 888500 TATGCCAAGAGACAACGGCGTCACGTCCAAAAGCAAAAGGTCTTGCACTGCCTCATGCTT 888441 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 || || | ||||| || || || |||| |||||||| ||||| |||||||| || || Sbjct 888440 ATCGCCTGACAAGATAGCCGCCTGTACCGCAGCCCCGTAAGCGACGGCCTCATCCGGATT 888381 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || | || |||| || || || || ||| | || | || | ||||| ||||| Sbjct 888380 GATGCTCTTGTTCAACTCCTTTCCATTGAAAAAGTCTTGCAGCAACTTTTGAACCTTCGG 888321 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 || || ||||| ||||| ||||| || | || | ||| | || ||||| | ||| | Sbjct 888320 AATACGAGTCGAGCCACCAACCAACACAACATCGTGCACCTGTGACTTATCCAGCTTGGC 888261 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || ||||| | ||||| || || |||| | |||||||| || || || || Sbjct 888260 ATCGCGAAGAGACTTTTCAACTGGATCCAAAGTGGAGCGGAACAAATCGGCGCAAAGCTC 888201 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 || ||||| ||||| || || | || || | || | ||| ||||| || ||||| Sbjct 888200 TTCGAAACGGGCACGAGTGATCGTGGTGTAATAGTCGATGCCCTCGTACAAACTGTCAAT 888141 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||| ||| | | ||| | | | ||||||| ||| || || || || || || || Sbjct 888140 TTCTATGCTCGCTTGAGTGGAGCTACTCAACGTTCTCTTGGCTCGTTCGCAAGCTGTACG 888081 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 |||||||| | |||||| || || || || || || ||||||| ||| || || ||||| Sbjct 888080 CAAACGACGCAAGGCACGAGGATTTCCCGACATGTCCTTCTTATTTTTGCGCTTGAACTC 888021 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||||| || | | || || || ||||| || | || ||||| || Sbjct 888020 GGCCACAAAGTGGGTAACCATGCGATTGTCAAAGTCCTCACCGCCAAGATGAGTATCGCC 887961 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||| || | || ||||| || ||||| | || || | | | || ||||| || || Sbjct 887960 CGCCGTAGACTTCACTTCGAATATACCATCCTCGATTGTCAGAATGGACACATCGAAGGT 887901 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTTATCGAGAC 7607 ||| || |||||||| || || ||||||||| ||| ||| | ||||| || | | Sbjct 887900 ACCGCCGCCCAGGTCGAAGATCAGTACGTTCCGCTCGCCCGTACCT-TTCTTGTCCAACC 887842 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCA 7666 | || |||||||| || || || || ||||| || || |||| |||| |||| |||| | Sbjct 887841 CATAGGCGATAGCGGCAGCGGTCGGCTCATTGATGATTCGAAGGACA-TTCAATCCAGAA 887783 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || || | || |||||||| || || | || ||||| || ||||||||||| || || Sbjct 887782 ATGGTACCTGCGTCTTTCGTTGCCTGCCTCTGAGAATCATTGAAGTAGGCCGGAACAGTG 887723 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 | || |||||| | || | ||||| | ||| | ||| || | ||||||||||| Sbjct 887722 ATAACGGCGTCCTTCACGGTTTTACCCAAATAAGCTTCTGCCGTCTCTTTCATTTTAACC 887663 Query 7787 AGAACCAT--CGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAA 7844 | ||||| || || | |||||| | | |||| || || || || || | || | Sbjct 887662 AATACCATAGCGCTG--ACCTCTTCGGGAGTAAACATCTTGGTCTCGCCTTTGTATTCCA 887605 Query 7845 CTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATAT 7904 | | |||| | || || | | ||| || ||||| | | ||||| ||||| | Sbjct 887604 CCTGAATCTTTGGCTTGCCTCCGTCAC---TGACCACCTTGAAAGGCCAATGCTTCATGT 887548 Query 7905 CGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTG 7964 | || || ||| | ||| ||||| || |||||||| || ||||| | Sbjct 887547 CAGACTGCACAGCAGCGTCATCGTATCTTCGCCCGATCAGTCGCTTTGCGTCGAAAACGG 887488 Query 7965 TGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTAT 8024 |||| | || |||| ||| ||||||||| || || || ||||| || | || | Sbjct 887487 TGTTGTGAGGATTCAAGGCGACTTGGTTCTTGGCGGCATCGCCGATCAGTC--TC-TCCG 887431 Query 8025 TTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTT 8084 | |||||||| || || || ||| || || || || || |||||||| || || || | Sbjct 887430 TGTCCGTAAAAGCCACATAGCTTGGCGTGGTGCGGTTGCCCTGGTCGTTGGCTATTATCT 887371 Query 8085 CTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 | || | | | || | || || ||||| ||||| || ||||| ||||| || Sbjct 887370 CCACCTTGCCATGCTGGAACACACCAACGCAACTGTACGTCGTACCTAAGTCAATTCC 887313 >seq51 Length=261480 Score = 147 bits (162), Expect = 3e-30 Identities = 331/492 (67%), Gaps = 19/492 (4%) Strand=Plus/Plus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || || || |||||| | | |||||||| || || | ||||| || || || Sbjct 32473 GGTTCGTTGATGATCCGAAGAACGGTTAGGCCAGCGATTGTACCTGCATCCTTTGTTGCC 32532 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||||||| | ||| || || ||||| || ||||| || || |||| ||||| ||||| Sbjct 32533 TGTCGTTGGGCATCATTGAAATAGGCAGGCACCGTAACCACAGCGTGTGTGACCTTCTTG 32592 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || ||||||| ||||| | || |||||||| || | ||||| | || ||||| || Sbjct 32593 CCAAGATACGCCTCCGCAGTTTCCTTCATTTTCGTCAACACCATAGCCGATATCTCCTCG 32652 Query 7811 GCCGCAAA---CTGTTTCG--TTTC--ACCGTTAAAATCAACTTCAATCATG-GGTTTAT 7862 | || || || |||| |||| || |||| | |||| | || ||||| Sbjct 32653 GGCGAGAAAGTCTTTTTCTCCTTTCCTACGGTTA-------CCTCAA-CGTGCGGTTTGC 32704 Query 7863 CCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGT 7922 ||| | || || || | | ||| ||| |||| |||| | || || Sbjct 32705 CCGATTGTTCA---ATCACTTTGAATGGCCACATTTTGCGATCGGCTTGTAAACTTTTGT 32761 Query 7923 CCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGG 7982 | || | | | ||||| | || || || |||||||| || |||| ||| ||| | Sbjct 32762 CAGACCATTCACGACCGATCATTCGTTTGGCGTCAAAAACGGTATTTTCGGGATTCGACG 32821 Query 7983 CTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGT 8042 || ||||| ||||| || || || ||||||||| | || ||||| |||| Sbjct 32822 TCAACTGATTCTTGGCCGCATCGCCTATTAGACGTTCACCTTCGGGAGTGAACGCCACGT 32881 Query 8043 ACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCC 8102 | || || || | ||||| ||||||||||| ||||||||||| ||||| | |||| Sbjct 32882 ATGACGGAGTGATCCGATTGCCTTGGTCGTTGGCAATAATTTCAACGCGACCATTTTTAA 32941 Query 8103 AGACGCCGACGC 8114 ||||||| |||| Sbjct 32942 AGACGCCAACGC 32953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130370617040