Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 2e-12 seq9 82.4 9e-11 >seq20 Length=1136993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||| || |||||||||||||| || || || || ||||| || || | ||||||| Sbjct 122957 TCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTT 122898 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCG 119636 ||||| ||||| | | ||||| || |||||||| ||||| || || ||| || || Sbjct 122897 AGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCT 122838 Query 119637 AATAGACGCTCAGCAAAAGGTCGAGACTTGT---CGAACCACTTGAGAGCCCAGTTGGCC 119693 | ||| || ||| || ||| ||||| ||| ||| |||||||| | |||| Sbjct 122837 ACTAGTCGATCACTGAATGGTGACTTCTTGTCCGCGATCCATCGTAGAGCCCAATCGGCC 122778 Query 119694 TT 119695 || Sbjct 122777 TT 122776 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| || |||||| | ||||||||||||| |||||||| || || || || ||||||| Sbjct 123318 ATATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTCAAGCGATATCATTTCCAT 123259 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 |||||| || ||||| | || || | || | || | | |||| || || | || Sbjct 123258 AAAGTCGAACGGATTCTCAGAATTGTATATCTTGTTGCAGTCCAA-TTCAACCAATAAAC 123200 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTAT 119377 |||||| || ||||| || ||| | ||||| ||| ||||||| || || Sbjct 123199 GATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATTCATGCCGAT 123148 >seq9 Length=1688204 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||| Sbjct 1306857 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGACCCCC 1306800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973747166800