Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq24 129 1e-24 >seq24 Length=829597 Score = 129 bits (142), Expect = 1e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||||||||| || || ||||| || ||||| || || |||||||||||||| Sbjct 294056 TTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTTTA 293997 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || ||||||||||||||||| || ||||| ||||||| ||||| |||||| Sbjct 293996 GTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTGTC 293937 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || | ||||||| Sbjct 293936 AATGTTTTGACAAAAATTTGCATT 293913 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| || ||||||||||| ||||| || || ||||| |||||||| ||||| |||| Sbjct 294341 GCTCACCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTT 294282 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || |||||||| || ||||| ||||||||| || |||| ||||| || | Sbjct 294281 TAGTCTTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAG 294222 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | |||||| || || | ||||| Sbjct 294221 TAAGAGTTTTCACAAATATCTGCAT 294197 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || | |||||||| ||||| ||||||||||| || || |||||||| Sbjct 294906 CTTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTT 294847 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || ||||| ||||| |||||||| |||||||| || || | ||||| || || Sbjct 294846 GGCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGT 294787 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||||||||| || || | ||||||| Sbjct 294786 CAAAGTTTTCACAAAAATTTGCATT 294762 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 293476 CTCACCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTCCTTGTCCTGAATTTT 293417 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| |||||||||| |||||||| ||||||||| | || | ||| || || || Sbjct 293416 TGCCTTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGTTATCGTTTTGCCGGT 293357 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 293356 TAAGGTCTTGACGAAAATCTGCAT 293333 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || |||||||||||| || || || || || || |||||||||||||| ||||||||||| Sbjct 293195 CTAACCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTT 293136 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || || ||||| | ||| || || ||||| || |||| || ||||| || Sbjct 293135 ATTCTTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGT 293076 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| ||||| | |||||| Sbjct 293075 GAGTGTTTTCACGAAAATCTGCATT 293051 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||| || || || | ||| || || || || || || || ||||||||||| || | Sbjct 295476 GCTCACCGGCAAAAATTAATCGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGGATCT 295417 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| ||||| || ||||| |||||| |||||||| || |||| ||||| |||| Sbjct 295416 TCGCCTTTACGTTTTCTATGGTATCCGAAGGCTCCACTTCCAGCGTAATAGTCTTCCCTG 295357 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| ||||| | ||||||| Sbjct 295356 TCAGCGTTTTCACGAATATTTGCATT 295331 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || ||||| ||||| || || |||||||| || ||||| || |||||||| ||| Sbjct 293769 TACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTG 293710 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| ||||| ||||||||||| || || ||||| || || | || || || |||| Sbjct 293709 TCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCA 293650 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| || || | ||||| Sbjct 293649 GCGTTTTCACAAATATCTGCAT 293628 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || || | || || || || |||||||| || |||||||| || || || Sbjct 295755 TACCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCG 295696 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || ||||| || || |||||||| |||||||||||||| | || || ||||||| Sbjct 295695 CTTTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCA 295636 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||| Sbjct 295635 ATGTCTTGACAAATATTTGCATT 295613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477250138702