Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 1e-15 >seq20 Length=1136993 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||| || |||||||||||| | || || |||| |||||||| || || || || Sbjct 123336 CATTACGCCGCACTTTTGATATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTC 123277 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||||| ||||||||| || || ||||| | ||| ||||| || ||| | | Sbjct 123276 AAGCGATATCATTTCCATAAAGTCGAACGGATTCTCAGAATTGTATATCTTGTTGCAGTC 123217 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATT 18836 ||||| | | || | ||| || || | | || ||| | ||||| || ||||| Sbjct 123216 CAATTCAACCAATAAACGATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATT 123157 Query 18837 CATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC 18896 ||| || || || || || || ||||| || || ||||| ||||| || || || || Sbjct 123156 CATGCCGATCAAGTTGACCGGAAGTGCTTCGGTCAGAAACTCTTGCTCAATGACGACCGC 123097 Query 18897 CTCTGATATAAT 18908 |||| ||| || Sbjct 123096 CTCTCTTATGAT 123085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106649933840