Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19 120 2e-21 seq24 96.9 3e-14 seq3 87.8 1e-11 >seq19 Length=1155537 Score = 120 bits (132), Expect = 2e-21 Identities = 353/541 (65%), Gaps = 10/541 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || || ||||| || || || ||||| |||||||| | || |||| || Sbjct 887307 GCTGTTGGAATTGACTTAGGTACGACGTACAGTTGCGTTGGTGTGTTCCAGCATGGCAAG 887366 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || ||||| || || || ||| | || || ||| ||||| |||| ||| Sbjct 887367 GTGGAGATAATAGCCAACGACCAGGGCAACCGCACCACGCCAAGCTATGTGGCTTTTACG 887426 Query 550112 GAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || | | | | | || ||||| || || | |||| | | |||||| ||| Sbjct 887427 GACACGGAGAGACTGA-TCGGCGATGCCGCCAAGAACCAAGTCGCCTTGAATCCTCACAA 887485 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || |||| || || || || | || || |||| | |||| | |||| ||| | Sbjct 887486 CACCGTTTTCGACGCAAAGCGACTGATCGGGCGAAGATACGATGACGCTGCTGTGCAGTC 887545 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289 || |||||||||||||||||| | | || | || || || || | ||| | | Sbjct 887546 TGACATGAAGCATTGGCCTTTCAAGGTGGTCAGTGACGGAGGCAAGCCAAAGATTCAGGT 887605 Query 550290 ---CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| | | || | || ||| | || ||| | | ||||||| | Sbjct 887606 GGAATACAAAGGCGAGACC----AAGATGTTTACTCCCGAAGAGGTCAGCGCTATGGTAT 887661 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | ||||||||| | || || |||| | | ||| || || | ||| || || | Sbjct 887662 TGGTTAAAATGAAAGAGACGGCAGAAGCTTATTTGGGTAAAACCGTGAAGGACGCCGTTA 887721 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| || || || || ||||| || || | || || || ||||| || || | Sbjct 887722 TCACTGTTCCGGCCTACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCAGGTACCA 887781 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 || ||||| | ||||| ||||| || |||||||| || || ||||| || | || |||| Sbjct 887782 TTTCTGGATTGAATGTCCTTCGAATCATCAATGAGCCGACCGCTGCCGCTATCGCCTATG 887841 Query 550527 G 550527 | Sbjct 887842 G 887842 >seq24 Length=829597 Score = 96.9 bits (106), Expect = 3e-14 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| ||||||| || |||||||| ||||| |||||||||||||| ||||| Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||| ||||| | | | || ||| || |||| || || |||||||| Sbjct 294276 TTCACATTCTCAATAGTATCCG-ACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAG 294218 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 |||||| || || || |||||| Sbjct 294217 AGTTTTCACAAATATCTGCATA 294196 >seq3 Length=2787444 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAA-CATTTTAACTAATTTTC 390913 ||||| ||| ||| ||||||| | | | ||||| || ||||||| | || | | Sbjct 2406521 ATTTCGTACCGTATCATCATAGTGAAGGCACAAATCTTCCAAGCATTTTACCAAACGT-C 2406579 Query 390914 TTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTG 390973 ||| ||||||||||| || || ||||||| ||||||| || | ||||||| |||| Sbjct 2406580 GTTGCATATAACCAGTTTCAGCTGTTTTAACCGCAGTATCTATCAATCCTTCTCGACCTG 2406639 Query 390974 CCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCAGA 391013 ||||| | |||||||| || | | |||||||| ||||| Sbjct 2406640 CCATAGCATGGAAGAAGAACTGATTTGGATTGAGGCCAGA 2406679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029279817339940