Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq20 86.0 7e-12 >seq20 Length=1136993 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 36885 TTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTT 36944 ||||||||||| || || ||||||||| ||||| ||||| ||||| || ||||| || Sbjct 123323 TTTTGATATTCGCCCACCTTTCTTTCGAAGAAATTGGTCTTACCTTCAAGCGATATCATT 123264 Query 36945 TCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGA 37004 |||||||| || || ||||| | ||| ||||| | | || ||||| || Sbjct 123263 TCCATAAAGTCGAACGGATTCTCAGAATTGTATATCTTGTTGCAGTCCAATTCAACCAAT 123204 Query 37005 AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGT 37064 | | ||| || || | ||||||||| ||||| ||||| | || || || || | Sbjct 123203 AAACGATCGGCCACGTACTCTATGTATCGGCACATCAGTTCGCAATTCATGCCGATCAAG 123144 Query 37065 TTTACTGGAATTGCATC 37081 || || |||| ||| || Sbjct 123143 TTGACCGGAAGTGCTTC 123127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314534388240