Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq24 123 2e-23 >seq24 Length=829597 Score = 123 bits (136), Expect = 2e-23 Identities = 125/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 101313 CATCGTC-CAATTG-CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTC 101370 ||||| | ||| || || ||| || || ||||| || |||||||| || ||||||||||| Sbjct 293491 CATCGACACAAGTGACTCACCGGCGAAGATCAACCGTTGTTGATCAGGGGGAATGCCTTC 293432 Query 101371 TTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGT 101430 || || ||||||||| ||||| | || |||||||| || | ||||||||| | || Sbjct 293431 CTTGTCCTGAATTTTTGCCTTTACGTTCTCAACAGTGTCCGAGGGTTCCACTTCTAATGT 293372 Query 101431 GACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | ||||||||||||||| || || || || ||||||||| Sbjct 293371 TATCGTTTTGCCGGTTAAGGTCTTGACGAAAATCTGCATG 293332 Score = 123 bits (136), Expect = 2e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 || ||| ||| ||||| || | ||||||||||| |||||||| |||||||||||||| | Sbjct 294344 ATAGCTCACCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTA 294285 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 |||| || ||| | || | ||| || |||| ||||||||| || || | || |||| Sbjct 294284 TTTTAGTCTTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGC 294225 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | |||||| |||||||||||||| Sbjct 294224 CAGTAAGAGTTTTCACAAATATCTGCAT 294197 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || || || |||||||| |||||||||||||| ||||| |||||||| Sbjct 294906 CTTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTT 294847 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || |||| | |||||| || | |||||||| || || | || ||||| || Sbjct 294846 GGCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGT 294787 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 |||||||| ||||| || ||||| Sbjct 294786 CAAAGTTTTCACAAAAATTTGCAT 294763 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| |||||||| || ||||| ||||| ||||||||||| ||||| || || |||||| Sbjct 294621 TTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTTT 294562 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || |||| | ||| || |||| |||||||| || |||| ||||| || || Sbjct 294561 GTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGTG 294502 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 294501 AGCGTCTTAACGAATATCTGCAT 294479 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||| || |||| |||||| ||||| || |||||||||||||||||||||||||| Sbjct 293195 CTAACCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTT 293136 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| |||| | | ||| |||| || ||||| || || | ||||| || || Sbjct 293135 ATTCTTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGT 293076 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 293075 GAGTGTTTTCACGAAAATCTGCAT 293052 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| ||||||||||| ||||| || ||||| || ||||| || || || || Sbjct 295755 TACCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCG 295696 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| || | || | |||||| || | ||||||||||| || | |||||||| || | Sbjct 295695 CTTTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCA 295636 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || || |||||||| ||||| Sbjct 295635 ATGTCTTGACAAATATTTGCAT 295614 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||||| ||||| || || || ||||| ||||||||||| ||| Sbjct 293769 TACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTG 293710 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || | || | ||||| |||| || ||||| || || | ||||||||||| | Sbjct 293709 TCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCA 293650 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 ||||| ||||||||||||||| Sbjct 293649 GCGTTTTCACAAATATCTGCATG 293627 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 ||| ||||| ||||| |||| ||||||||||| ||||| ||||| || ||||||||||| Sbjct 295191 TTGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAAT 295132 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 || ||||| | || | || || |||| || ||||| | |||| ||||| || Sbjct 295131 CTTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCC 295072 Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| | ||||| ||||| || ||||| Sbjct 295071 GGTCAGTGTTTTCACAAAGATTTGCAT 295045 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || || | ||||| || || |||||||| || || || ||||||||||| Sbjct 294056 TTACCGGCGAAGATAAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCTTGAATTTTA 293997 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||||| |||| || ||||| || || | || ||||| || Sbjct 293996 GTTTTAACATTCTCAATGGTGTCCGACGGCTCTACTTCGAGGGTAATGGTCTTGCCTGTC 293937 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || ||||| Sbjct 293936 AATGTTTTGACAAAAATTTGCAT 293914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276922129242