Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq22 95.1 9e-15 seq24 93.3 3e-14 >seq22 Length=1093107 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 9141 ATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCAC 9200 ||||||||| || ||||| || || || ||||| || | |||||||| || || ||||| Sbjct 787439 ATTGAACAGTACTACTCCAACATTGCCTCTGTAGTCTCCGTCGATCACGCCGGCTCCCAC 787380 Query 9201 GTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCAC 9260 ||||||| ||||||| || || || || || || || || | || |||||||| ||| | Sbjct 787379 GTCGATGCAGTGCTTAACTGCAAGGCCTGAACGCGGGGCAACACGTCCGTAGCAACCCTC 787320 Query 9261 CGGTA 9265 |||| Sbjct 787319 AGGTA 787315 >seq24 Length=829597 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 48621 TGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATC 48680 || ||||||||||| ||||| ||||||||||| | || | ||||||||| || |||| Sbjct 295190 TGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAATC 295131 Query 48681 TTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCC 48740 || ||||| | | | ||||||| ||| || |||| ||| || |||||||| Sbjct 295130 TTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCCG 295071 Query 48741 GTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || ||||| Sbjct 295070 GTCAGTGTTTTCACAAAGATTTGCAT 295045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || ||| || || ||||| ||||| ||||||| ||||| ||| || || || ||| || Sbjct 293195 CTAACCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTT 293136 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | || || |||| ||| || || | |||||| ||||||||||| Sbjct 293135 ATTCTTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGT 293076 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||||| || ||||||||||| Sbjct 293075 GAGTGTTTTCACGAAAATCTGCAT 293052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936179340838