Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19 161 6e-34 seq24 86.0 4e-11 >seq19 Length=1155537 Score = 161 bits (178), Expect = 6e-34 Identities = 367/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| ||||| ||||| || || |||||||| || | ||| | || |||| || || | Sbjct 887311 TTGGAATTGACTTAGGTACGACGTACAGTTGCGTTGGTGTGTTCCAGCATGGCAAGGTGG 887370 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | ||||| ||||| ||||| || || | || || ||| ||||| ||||||| || | Sbjct 887371 AGATAATAGCCAACGACCAGGGCAACCGCACCACGCCAAGCTATGTGGCTTTTACGGACA 887430 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || || || || ||||| || || | |||| || | |||||| || || Sbjct 887431 CGGAGAGACTGATCGGCGATGCCGCCAAGAACCAAGTCGCCTTGAATCCTCACAACACCG 887490 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 |||| || || || || |||| || || | | ||||| | |||| || ||||| | Sbjct 887491 TTTTCGACGCAAAGCGACTGATCGGGCGAAGATACGATGACGCTGCTGTGCAGTCTGACA 887550 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAAT 474630 || ||||||||||| |||||| | | || || || || ||| | || || | ||| Sbjct 887551 TGAAGCATTGGCCTTTCAAGGTGGTCAGTGACGGAGGCAAGCCAAAGATTCAGGTGGAAT 887610 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| ||| || || || ||| | || ||| | | | ||||| || | || Sbjct 887611 ACA--AAGGCGAGACCAAGATGTTTACTCCCGAAGAGGTCAGCGCTATGGTATTGGTTAA 887668 Query 474691 AATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 ||||||| | || || |||| ||| | || || || | || || || || ||| Sbjct 887669 AATGAAAGAGACGGCAGAAGCT--TATTTGGGTAAAACCGTGAAGGACGCCGTTATCACT 887726 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||| || || || ||||||||||| | || ||||| ||||| || || | ||| | Sbjct 887727 GTTCCGGCCTACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCAGGTACCATTTCT 887786 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | ||||| | || || || ||||| || || || ||||| | || ||||| | Sbjct 887787 GGATTGAATGTCCTTCGAATCATCAATGAGCCGACCGCTGCCGCTATCGCCTATGGGTTG 887846 Query 474869 GATAAGAA 474876 || ||||| Sbjct 887847 GACAAGAA 887854 >seq24 Length=829597 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | ||| || ||||||||||||||||| || ||||| || ||||| | Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || || || ||||| || | | | ||||||||| |||||||| || || | Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| || || ||||| Sbjct 295633 GTCTTGACAAATATTTG 295617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268166074175288