Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq19 399 3e-106 seq24 147 3e-30 seq51 107 3e-18 >seq19 Length=1155537 Score = 399 bits (442), Expect = 3e-106 Identities = 904/1339 (68%), Gaps = 25/1339 (2%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||| |||| || || ||||| || || ||| || |||||||| | || ||| Sbjct 887307 GCTGTTGGAATTGACTTAGGTACGACGTACAGTTGCGTTGGTGTGTTCCAGCATGGCAAG 887366 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || | || ||||| || ||||| || || ||| || || || ||||| Sbjct 887367 GTGGAGATAATAGCCAACGACCAGGGCAACCGCACCACGCCAAGCTATGTGGCTTTTACG 887426 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || | || | || |||||||| || || || || |||| ||| ||| Sbjct 887427 GACACGGAGAGACTGATCGGCGATGCCGCCAAGAACCAAGTCGCCTTGAATCCTCACAAC 887486 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAA--GTCCAAG 195536 || || || ||||| ||||| || || || || ||| | || | | || || Sbjct 887487 ACCGTTTTCGACGCAAAGCGACTGATCGGGCG-AAGATA-CGATGACGCTGCTGTGCAGT 887544 Query 195537 ACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| | ||| ||| | ||| || || ||| | | ||||| | |||| Sbjct 887545 CTGACATGAAGCATTGGCCTT-TCAAGGTGGTCA--GTGACGGAGGCAAGCCAAAGATTC 887601 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || |||| | || |||| || ||| |||||||||| | ||||||| | Sbjct 887602 AGGTGGAATACAAAGGCGAGACCAAGATGTTTACTCCCGAAGAGGTCAGCGCTATGGTAT 887661 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 || |||| ||||| ||||| || ||| ||| |||||||||| ||||| || || ||| Sbjct 887662 TGGTTAAAATGAAAGAGACGGCAGAAGCTTATTTGGGTAAAACCGTGAAGGACGCCGTTA 887721 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || ||||||| |||||| || | ||||| || || ||||| | | | | Sbjct 887722 TCACTGTTCCGGCCTACTTCAATGATTCTCAGAGGCAGGCAACGAAAGACGCAGGTACCA 887781 Query 195777 TTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | || | || |||| || |||| |||||||| || || || || || || || ||| Sbjct 887782 TTTCTGGATTGAA-TGTCCTTCGAATCATCAATGAGCCGACCGCTGCCGCTATCGCCTAT 887840 Query 195836 GGTCTGGACAAGAACAAGGACGAA-GATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || |||||||||| | | ||| || || ||| ||||||| || || || || || Sbjct 887841 GGGTTGGACAAGAA-AGGTACGGGCGAGCGGAACGTACTGATCTTCGACCTGGGCGGCGG 887899 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||| || ||||| || |||| | || || | ||||||||||||||| ||| |||| || Sbjct 887900 TACCTTCGATGTGTCCATTCTGACAATCGAGGATGGTATATTCGAAGTGAAGTCTACGGC 887959 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013 || ||||||||||| || ||||| || || || || | | || ||||| | Sbjct 887960 GGGCGATACTCATCTTGGCGGTGAGGACTTTGACAATCGCATGGTTACCCACTTTGT-GG 888018 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGC 196073 |||||| || || |||||||| || || || ||||||||| | || | ||||| Sbjct 888019 CCGAGTTCAAGCGCAAAAATAAGAAGGACATGTCGGGAAATCCTCGTGCCTTGCGTCGTT 888078 Query 196074 TTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTG 196133 | | || || || ||||| ||||| |||| | | | ||||| | | | | Sbjct 888079 TGCGTACAGCTTGCGAACGAGCCAAGAGAACGTTGAGTAGCTCCACTCAAGCGAGCATAG 888138 Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193 | ||||| |||| || || || |||| || || || || || ||||| ||||| | Sbjct 888139 AAATTGACAGTTTGTACGAGGGCATCGACTATTACACCACGATCACTCGTGCCCGTTTCG 888198 Query 196194 AAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT-ACTTCGT 196252 ||||| | | | |||||||| | | |||| || |||||| |||| ||||| Sbjct 888199 AAGAGCTTTGCGCCGATTTGTTCCGCTCCACTTTGGATCCAGTTGAA-AAGTCTCTTCGC 888257 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 || || ||| |||||||||| |||| | || |||| | || || || || || ||| Sbjct 888258 GATGCCAAGCTGGATAAGTCACAGGTGCACGATGTTGTGTTGGTTGGTGGCTCGACTCGT 888317 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAAAAC 196371 ||||||||| ||||| || ||| | | || ||| |||||| || || || ||||| | Sbjct 888318 ATTCCGAAGGTTCAAAAGTTGC-TGCAAGACTTTTTCAATGGAAAGGAGTTGAACAAGAG 888376 Query 196372 GATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 ||||| |||||||| || || ||||| || || || || ||||| ||||| | ||||| Sbjct 888377 CATCAATCCGGATGAGGCCGTCGCTTACGGGGCTGCGGTACAGGCGGCTATCTTGTCAGG 888436 Query 196432 TGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGG 196491 | | | || | || ||||| ||| |||| | || || | || | || || || Sbjct 888437 CGATAAGCATGAGGCAGTGCAAGACCTTTTGCTTTTGGACGTGACGCCGTTGTCTCTTGG 888496 Query 196492 TCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATA----GGAACACAACTATTC 196547 | ||||| || |||||||||||||| | ||||||| | || || || || | Sbjct 888497 CATAGAAACCGCCGGTGGTGTTATGAC----AGCATTGATAAAGCGTAATACTACGATAC 888552 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTC 196607 | || ||| ||||| ||| | || |||||||| ||||| || || || | || | Sbjct 888553 CAACGAAGGTTTCCCAAGTGTTTACTACTTATTCCGACAATCAGCCCGGAGTGCTGATCC 888612 Query 196608 AAGTATATGAAGGAGAACG 196626 | || || ||||| || || Sbjct 888613 AGGTGTACGAAGGCGAGCG 888631 >seq24 Length=829597 Score = 147 bits (162), Expect = 3e-30 Identities = 123/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||||||||| || || |||||||| ||||| | || || ||| Sbjct 295040 GTGGTATGCAAATCTTTGTGAAAACACTGACCGGAAAAACAATCACGTTGGAAGTCGAGC 295099 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 ||||||| || ||||| ||| | || | ||||||||||||||||| ||||| || || | Sbjct 295100 CGTCAGATACGATCGAGAACGTAAAGACGAAGATTCAAGATAAGGAGGGCATACCGCCTG 295159 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACA 172007 |||| || || || |||||||| |||||||| Sbjct 295160 ATCAACAGCGCCTGATTTTTGCCGGTAAACA 295190 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || || || |||||||| || || || |||||| |||| Sbjct 293628 ATGCAGATATTTGTGAAAACGCTGACCGGCAAAACTATAACGCTGGAAGTTGAGCCGTCC 293687 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || |||||| | || | |||||||||||||||||||| || || || |||||| Sbjct 293688 GACACCATTGATAACGTGAAGACAAAGATTCAAGATAAGGAAGGGATCCCTCCAGATCAG 293747 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || ||||| || ||||| |||| Sbjct 293748 CAGCGACTAATCTTTGCCGGTA 293769 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||||||||| | ||||| || || || || || || || ||| | || Sbjct 294763 ATGCAAATTTTTGTGAAAACTTTGACTGGCAAGACAATAACGCTGGAAGTGGAGCCCTCG 294822 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | |||||||| ||||| ||||||||||||||||| || ||||| Sbjct 294823 GACACTATTGAAAACGTGAAAGCCAAAATTCAGGATAAGGAAGGCATTCCGCCAGATCAA 294882 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||| ||||| Sbjct 294883 CAACGCTTAATTTTTGCCGGTAA 294905 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || || || || || || ||||| ||||| ||||||||||| || ||| ||| Sbjct 294477 GTATGCAGATATTCGTTAAGACGCTCACTGGGAAAACAATCACCCTCGAAGTGGAGCCGT 294536 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 |||| || || || ||| | ||| | || || || || || || |||||||| || |||| Sbjct 294537 CAGATACTATTGAAAACGTTAAAACAAAAATACAGGACAAAGAGGGCATTCCGCCAGATC 294596 Query 171980 AGCAACGACTTATTTTTGCTGGTAAA 172005 |||| || | || |||||||||||| Sbjct 294597 AGCAGCGCTTAATATTTGCTGGTAAA 294622 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || | || || |||||||| ||||| || || ||| | || Sbjct 295614 ATGCAAATATTTGTCAAGACATTGACAGGCAAAACTATAACCCTTGAAGTGGAGCCCTCG 295673 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||||| ||||| || || || || || ||||| || |||||| Sbjct 295674 GACACTATCGACAACGTGAAAGCGAAGATACAGGACAAAGAGGGAATTCCTCCTGATCAG 295733 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || | ||||||||||||| Sbjct 295734 CAGCGTTTGATTTTTGCTGGTA 295755 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || |||||||| || || |||||||| || || ||||| |||||| |||| Sbjct 293052 ATGCAGATTTTCGTGAAAACACTCACGGGAAAAACCATTACGCTCGAAGTTGAGCCGTCC 293111 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | || || || | || || ||||||||||| ||||||||||| || |||||| Sbjct 293112 GACTCGATTGAAAATGTGAAGAATAAAATTCAAGATAAAGAAGGCATTCCCCCGGATCAG 293171 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || || || ||| Sbjct 293172 CAGCGTCTGATCTTCGCAGGT 293192 Score = 105 bits (116), Expect = 9e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || ||||||||||| |||||||| || || || || || || || || Sbjct 294192 GTGGTATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATTACGCTGGAAGTGGAAC 294251 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| || || || || || | || | || || |||||||| ||||| ||||| || | Sbjct 294252 CGTCGGATACTATTGAGAATGTGAAGACTAAAATACAAGATAAAGAAGGTATTCCGCCTG 294311 Query 171977 ATCAGCAACGACTTATTTTTGCTGGT 172002 |||| || |||||||| ||||| ||| Sbjct 294312 ATCAACAGCGACTTATCTTTGCCGGT 294337 >seq51 Length=261480 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || || ||| |||||||||||| || |||||||| |||||||| | | | Sbjct 32654 CCCGAGGAGATATCGGCTATGGTGTTGACGAAAATGAAGGAAACTGCGGAGGCGTATCTT 32595 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || | || | | | || || || || || ||||| || |||| |||| | |||||| Sbjct 32594 GGCAAGAAGGTCACACACGCTGTGGTTACGGTGCCTGCCTATTTCAATGATGCCCAACGA 32535 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| |||||||| || | | | || || || |||| | |||| | || ||||| ||| Sbjct 32534 CAGGCAACAAAGGATGCAGGTACAATCGCTGGCCTAACCGTTCTTCGGATCATCAACGAA 32475 Query 195812 CC 195813 || Sbjct 32474 CC 32473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859883676320