Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq24 122 2e-22 >seq24 Length=829597 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||| |||| || ||| ||||| ||||| || ||||| |||||||| || || || Sbjct 293767 CCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTGTC 293708 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | || ||| || ||||| | ||||||||| || ||||||||||| || || ||| Sbjct 293707 TTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCAGC 293648 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| |||||||| ||||| Sbjct 293647 GTTTTCACAAATATCTGCAT 293628 Score = 120 bits (132), Expect = 5e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||||||||||| ||| ||||| || || || || ||||| ||||| || || | Sbjct 295471 CCGGCAAAAATTAATCGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGGATCTTCGCC 295412 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| |||| ||| ||||| || || ||||| || ||||| ||| Sbjct 295411 TTTACGTTTTCTATGGTATCCGAAGGCTCCACTTCCAGCGTAATAGTCTTCCCTGTCAGC 295352 Query 193341 GTTTTTACAAATATTTGCATT 193361 ||||| || |||||||||||| Sbjct 295351 GTTTTCACGAATATTTGCATT 295331 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||| || | || |||||||||||| || || |||||||||||||||||||| || Sbjct 294336 CCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGTC 294277 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| ||||||||| || | || ||||| || || || || || || || || Sbjct 294276 TTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAGA 294217 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| |||||||| ||||| Sbjct 294216 GTTTTCACAAATATCTGCAT 294197 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || |||||||||||||| | |||||||| || || || ||||| ||||| || |||||| Sbjct 294905 TTACCGGCAAAAATTAAGCGTTGTTGATCTGGCGGAATGCCTTCCTTATCCTGAATTTTG 294846 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||| | ||| |||||| || || | ||| ||||| || ||||| || || || || Sbjct 294845 GCTTTCACGTTTTCAATAGTGTCCGAGGGCTCCACTTCCAGCGTTATTGTCTTGCCAGTC 294786 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 | ||||| ||||| ||||||||| Sbjct 294785 AAAGTTTTCACAAAAATTTGCATT 294762 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| || | ||| ||||||||||| ||||| ||||| || ||||| || | | Sbjct 295753 CCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCGCT 295694 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | || ||||| || || | ||| ||||| || ||||||||||| ||||| | Sbjct 295693 TTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCAAT 295634 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||||||||||||| Sbjct 295633 GTCTTGACAAATATTTGCATT 295613 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 |||||| ||||||||||| | | |||||||||||| ||||| || || |||||||| || Sbjct 295191 TTGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAAT 295132 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 || || |||| || || ||||| || | ||| ||||| | || || ||||| || Sbjct 295131 CTTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCC 295072 Query 193334 TGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| |||||||| Sbjct 295071 GGTCAGTGTTTTCACAAAGATTTGCAT 295045 Score = 89.7 bits (98), Expect = 9e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || || |||||||||||||| ||||| | || | |||| ||| | Sbjct 293174 CTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATTCTTCACATTTTCAATCGA 293115 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||||| | ||||||||| || || || ||||| || || || ||||| || || || || Sbjct 293114 GTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAGTGTTTTCACGAAAATCTG 293055 Query 193358 CATT 193361 |||| Sbjct 293054 CATT 293051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899650958821920