Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq24 100 4e-16 seq20 86.0 9e-12 >seq24 Length=829597 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | ||||| || || ||||| | ||||| ||| || Sbjct 294197 ATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATTACGCTGGAAGTGGAACCGTCG 294256 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||| | ||||||||||||||||||||| || || || || ||| Sbjct 294257 GATACTATTGAGAATGTGAAGACTAAAATACAAGATAAAGAAGGTATTCCGCCTGATCAA 294316 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || || | || | ||||||| ||| Sbjct 294317 CAGCGACTTATCTTTGCCGGTGAGC 294341 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || |||||||| || | ||||| || || Sbjct 295614 ATGCAAATATTTGTCAAGACATTGACAGGCAAAACTATAACCCTTGAAGTGGAGCCCTCG 295673 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| || ||||| || ||||| || || ||||| || || Sbjct 295674 GACACTATCGACAACGTGAAAGCGAAGATACAGGACAAAGAGGGAATTCCTCCTGATCAG 295733 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | ||||||| ||| |||| Sbjct 295734 CAGCGTTTGATTTTTGCTGGTA 295755 >seq20 Length=1136993 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 ||||||| ||| || | || || ||||| || | || ||||| | ||| | ||| ||| Sbjct 122957 TCATCTCGGGAGATGAGCTCATTGCTAAAAGTGAGACCTGGCATAAGACCACGTTTCTTT 122898 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCT 18301 ||||| || ||||| |||||||| | ||||||||||| || |||||| || || ||| Sbjct 122897 AGCCAGAAGATCGAAGCGAAACTGCCCGAAAAGAATATGCCTTCAACGGCGGCAAATGCT 122838 Query 18302 ATTAATC 18308 | || || Sbjct 122837 ACTAGTC 122831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869200589600