Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq24 129 1e-24 >seq24 Length=829597 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | || |||||||||||| || || ||||||||||||||||||||| | Sbjct 294337 ACCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGT 294278 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| |||| ||| |||| ||| ||||| || ||||| || || ||||| | Sbjct 294277 CTTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAG 294218 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||||||| Sbjct 294217 AGTTTTCACAAATATCTGCAT 294197 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 |||||||||||| ||||| | ||| ||||| || || || || ||||| || |||||||| Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTT 294563 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 |||| || || |||| |||||||| || ||||| || || || ||||| ||||| Sbjct 294562 TGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGT 294503 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || |||| ||||||||||| Sbjct 294502 GAGCGTCTTAACGAATATCTGCAT 294479 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| || ||||| | | ||| ||||| || || || |||||||||||||| |||||||| Sbjct 293192 ACCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATT 293133 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || ||||| || || || |||| || ||||| || ||||||||||| || || | Sbjct 293132 CTTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAG 293073 Query 192516 TGTTTTAATAAATATCTGCATT 192537 |||||| | || ||||||||| Sbjct 293072 TGTTTTCACGAAAATCTGCATT 293051 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 192390 TTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 ||||||||| ||||| || | | |||||||||||| ||||| || || |||||||| || Sbjct 295191 TTGTTTACCGGCAAAAATCAGGCGCTGTTGATCAGGCGGTATGCCCTCCTTATCTTGAAT 295132 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || | ||||| || || | |||||||| || ||||| | || || ||||| || Sbjct 295131 CTTCGTCTTTACGTTCTCGATCGTATCTGACGGCTCGACTTCCAACGTGATTGTTTTTCC 295072 Query 192510 AGTTAATGTTTTAATAAATATCTGCAT 192536 || | |||||| | ||| || ||||| Sbjct 295071 GGTCAGTGTTTTCACAAAGATTTGCAT 295045 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| |||||||||| || ||| ||||| || || || ||||| |||||||| || || Sbjct 293769 TACCGGCAAAGATTAGTCGCTGCTGATCTGGAGGGATCCCTTCCTTATCTTGAATCTTTG 293710 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 | || || ||| || | || |||| || ||||| || || || ||||| || || | Sbjct 293709 TCTTCACGTTATCAATGGTGTCGGACGGCTCAACTTCCAGCGTTATAGTTTTGCCGGTCA 293650 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||||||| Sbjct 293649 GCGTTTTCACAAATATCTGCAT 293628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984476140223100