Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq24 120 5e-22 >seq24 Length=829597 Score = 120 bits (132), Expect = 5e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||| || | || |||||| ||||| || || ||||||||||||||||||||| | Sbjct 294337 ACCGGCAAAGATAAGTCGCTGTTGATCAGGCGGAATACCTTCTTTATCTTGTATTTTAGT 294278 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || ||||| |||||||| |||| ||| ||||| || ||||| || || ||||| | Sbjct 294277 CTTCACATTCTCAATAGTATCCGACGGTTCCACTTCCAGCGTAATTGTCTTGCCAGTAAG 294218 Query 172049 TGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||| Sbjct 294217 AGTTTTCACAAATATCTGCAT 294197 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||||||| ||||| | ||| || || || || || || ||||| || |||||||| Sbjct 294622 TTTACCAGCAAATATTAAGCGCTGCTGATCTGGCGGAATGCCCTCTTTGTCCTGTATTTT 294563 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 |||| || || ||||||||||||| || ||||| || || || ||||| ||||| Sbjct 294562 TGTTTTAACGTTTTCAATAGTATCTGACGGCTCCACTTCGAGGGTGATTGTTTTCCCAGT 294503 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 | || |||| |||||||||||| Sbjct 294502 GAGCGTCTTAACGAATATCTGCAT 294479 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| || || || | | ||| || || || || || |||||||||||||| |||||||| Sbjct 293192 ACCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCTTCTTTATCTTGAATTTTATT 293133 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || ||||| || | || |||| || ||||| || ||||||||||| || || | Sbjct 293132 CTTCACATTTTCAATCGAGTCGGACGGCTCAACTTCGAGCGTAATGGTTTTTCCCGTGAG 293073 Query 172049 TGTTTTAATGAATATCTGCATT 172070 |||||| | ||| ||||||||| Sbjct 293072 TGTTTTCACGAAAATCTGCATT 293051 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| ||||||||||||| ||| || || ||||| || || ||||| ||||| || || Sbjct 295472 ACCGGCAAAAATTAATCGCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGGATCTTCGC 295413 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||||| || ||| ||||| || | || ||||| || ||||| || || || || | Sbjct 295412 CTTTACGTTTTCTATGGTATCCGAAGGCTCCACTTCCAGCGTAATAGTCTTCCCTGTCAG 295353 Query 172049 TGTTTTAATGAATATCTGCATT 172070 ||||| | |||||| |||||| Sbjct 295352 CGTTTTCACGAATATTTGCATT 295331 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| || | ||| || ||||| || ||||| ||||| || ||||| || Sbjct 295755 TACCAGCAAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCTTTGTCCTGTATCTTCG 295696 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| || || ||||| || || | || ||||| || || || ||||| || || | Sbjct 295695 CTTTCACGTTGTCGATAGTGTCCGAGGGCTCCACTTCAAGGGTTATAGTTTTGCCTGTCA 295636 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 |||| || | ||||| |||||| Sbjct 295635 ATGTCTTGACAAATATTTGCATT 295613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905132537854800