Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq40 107 2e-17 seq19 107 2e-17 seq11 105 8e-17 seq16 100 3e-15 seq4 100 3e-15 seq14 96.9 4e-14 seq56 86.0 8e-11 >seq40 Length=417382 Score = 107 bits (118), Expect = 2e-17 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||| ||||| || |||||||| | | || |||||||| || || || | || ||| Sbjct 306136 AGGCGGACGGCTGTTTGGATCTCTCTTGAGCTGATCGTGTGTCGATTATTGTAATGGGCC 306077 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || || |||| | | || || || | || ||| || ||||| |||||||| Sbjct 306076 AGGCGAGATGCTTCGGCGGCAATTCGATCAAACACGTCATTCACAAAGCTGTTCATGATT 306017 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| |||| || ||||||| ||| || || || ||||| || |||||||||||| Sbjct 306016 GACATCGCCTTGCTGCTGATGCCCGTGTCAGGATGTACTTGCTTCAGTACCTTGTAGATG 305957 Query 1254549 AACG 1254552 ||| Sbjct 305956 TACG 305953 >seq19 Length=1155537 Score = 107 bits (118), Expect = 2e-17 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||| ||||| || ||||| || | | || ||| || | || ||||| |||| ||| Sbjct 983070 AGGCGGACGGCCGTTTGGATTTCTCTTGAGCTGATGGTATGACGGTTGTTATAGTGGGCC 983011 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 ||||| || ||| || || || |||| | || || ||||| |||||||| | Sbjct 983010 AGACGAGATGCTTCGCCACCAATTCGATCGAATACATCATTTACAAAGCTGTTCATGATC 982951 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| |||| || ||||||| |||||| || || ||||| || |||||||||||| Sbjct 982950 GACATCGCCTTGCTGCTGATGCCCGTGTCGGGATGAACTTGCTTCAGTACCTTGTAGATG 982891 Query 1254549 AACG 1254552 ||| Sbjct 982890 TACG 982887 Score = 89.7 bits (98), Expect = 6e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || ||||| || ||||| || | | || ||| || | || ||||| |||| ||| Sbjct 1027189 AGACGGACGGCCGTTTGGATTTCTCTTGAGCTGATGGTATGACGGTTGTTATAGTGGGCC 1027130 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 ||||| || ||| || || || |||| | || || ||||| |||||||| | Sbjct 1027129 AGACGAGATGCTTCGCCACCAATTCGATCGAAGACATCATTCACAAAGCTGTTCATGATC 1027070 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||| || |||||| |||||| || || || || || |||||||||||| Sbjct 1027069 GACATCGCTTTGCTGCTAATGCCCGTGTCGGGATGAACTTGTTTCAGTACCTTGTAGATG 1027010 Query 1254549 AACG 1254552 ||| Sbjct 1027009 TACG 1027006 >seq11 Length=1611644 Score = 105 bits (116), Expect = 8e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 1254351 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTG 1254410 |||||||| ||| | ||||||||| || ||||| |||||||| | | || || | | Sbjct 311310 AGTTCGCCAGGCAACAGCAGGCGCACAGCAGTCTGAATCTCGCGAGAACTTATGGTATGG 311251 Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 || || || ||||||||||||| ||||| | |||| || |||| | |||||| Sbjct 311250 CGATTATTGTAGTGCGCCAGACGAGATGCCTCTGCTGCGATACGATCGAAAACATCGTTG 311191 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 ||||| |||||| | ||||| | ||| || || || ||| || ||||||||| Sbjct 311190 ACAAAGCTGTTCATAATGGACATTGCTTTGCTGCTAATTCCAGTGTCTGGATGCACCTGC 311131 Query 1254531 TTGAGCACCTTGTAGATG 1254548 || | |||||||||||| Sbjct 311130 TTCAAAACCTTGTAGATG 311113 >seq16 Length=1253240 Score = 100 bits (110), Expect = 3e-15 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1254351 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTG 1254410 |||||||| ||| | ||||||||| || ||||| ||||| || | | || || | | Sbjct 513211 AGTTCGCCAGGCAACAGCAGGCGCACAGCAGTCTGAATCTCACGAGAACTTATGGTATGG 513270 Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 || || || ||||||||||||| ||||| | |||| || |||| | |||||| Sbjct 513271 CGATTATTGTAGTGCGCCAGACGAGATGCCTCTGCTGCGATACGATCGAAAACATCGTTG 513330 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 ||||| |||||| | ||||| | ||| || || || ||| || ||||||||| Sbjct 513331 ACAAAACTGTTCATAATGGACATTGCTTTGCTGCTAATTCCAGTGTCTGGATGCACCTGC 513390 Query 1254531 TTGAGCACCTTGTAGATG 1254548 || | |||||||||||| Sbjct 513391 TTCAAAACCTTGTAGATG 513408 >seq4 Length=2444288 Score = 100 bits (110), Expect = 3e-15 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 1254351 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTG 1254410 |||||||| ||| | ||||||||| || ||||| ||||| || | | || || | | Sbjct 2034024 AGTTCGCCAGGCAACAGCAGGCGCACAGCAGTCTGAATCTCACGAGAACTTATGGTATGG 2033965 Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 || || || ||||||||||||| ||||| | |||| || |||| | |||||| Sbjct 2033964 CGATTATTGTAGTGCGCCAGACGAGATGCCTCTGCTGCGATACGATCGAAAACATCGTTG 2033905 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 ||||| |||||| | ||||| | ||| || || || ||| || ||||||||| Sbjct 2033904 ACAAAACTGTTCATAATGGACATTGCTTTGCTGCTAATTCCAGTGTCTGGATGCACCTGC 2033845 Query 1254531 TTGAGCACCTTGTAGATG 1254548 || | |||||||||||| Sbjct 2033844 TTCAAAACCTTGTAGATG 2033827 >seq14 Length=1477134 Score = 96.9 bits (106), Expect = 4e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || || || ||||| ||||| | | || |||||||| || ||| | | || || Sbjct 1445613 AGACGGACTGCCGTCTGAATCTCTCTTGAGCTGATCGTGTCTCGATTGGTGTACTGGGCG 1445672 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || ||||| | || ||||||| || |||||||||||| |||||| | Sbjct 1445673 AGGCGAGACGCCTCTTCAGCTATTCGGTCGAACACGTCGTTGACAAAGCTGTTCATAATA 1445732 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| |||| || ||||||| ||| || || || ||||| || |||||||||||| Sbjct 1445733 GACATCGCCTTGCTGCTGATGCCCGTGTCAGGATGGACTTGCTTCAGTACCTTGTAGATG 1445792 Query 1254549 AAC 1254551 || Sbjct 1445793 TAC 1445795 >seq56 Length=268076 Score = 86.0 bits (94), Expect = 8e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254351 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTG 1254410 || || ||| ||| | || || ||||| ||||| || || || | || |||||| || Sbjct 230305 AGCTCACCGGGCAATAGGAGACGAACGGCTGTCTGAATTTCACGAGAGCTGATCGTACTG 230364 Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 || | ||| || |||||||| ||||| | | ||||| |||| | ||||| Sbjct 230365 CGTTGGTTAATCTGTGCCAGACGAGACGCCTCAGCAGCAATGCGCTCGAATACATCGTTC 230424 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 ||||| ||||| | |||||| | ||| || ||||||| || || || |||||| Sbjct 230425 ACAAAACTATTCATAATCGACATGGCTTTGCTGCTGATGCCCGTATCCGGATGAACCTGC 230484 Query 1254531 TTGAGCACCTTGTAGAT 1254547 || ||||||||||| || Sbjct 230485 TTTAGCACCTTGTATAT 230501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107114088207002