Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq24 107 2e-18 >seq24 Length=829597 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | |||||||| ||||| |||||||| ||||| ||||| || | || Sbjct 293628 ATGCAGATATTTGTGAAAACGCTGACCGGCAAAACTATAACGCTGGAAGTTGAGCCGTCC 293687 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || ||||| ||| ||||| || ||||| || ||||| ||||| Sbjct 293688 GACACCATTGATAACGTGAAGACAAA-GATTCAAGATAAGGAAGGGATCCCTCCAGATCA 293746 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || | ||||||||||| Sbjct 293747 GCAGCGACTAATCTTTGCCGG 293767 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || ||||||| ||||| || || | ||||| ||| || | Sbjct 293333 ATGCAGATTTTCGTCAAGACCTTAACCGGCAAAACGATAACATTAGAAGTGGAACCCTCG 293392 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| || || | ||||| ||| || || ||||| ||||| || || || |||||| Sbjct 293393 GACACTGTTGAGAACGTAAAGGCAAAAATTCAGGACAAGGAAGGCATTCCCCCTGATCAA 293452 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||||||| ||||| Sbjct 293453 CAACGGTTGATCTTCGCCGG 293472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | |||||||| || || || ||||||||||| ||||| || | | Sbjct 295332 ATGCAAATATTCGTGAAAACGCTGACAGGGAAGACTATTACGCTGGAAGTGGAGCCTTCG 295391 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| ||||| ||||||||||||||||| || || || || ||||| Sbjct 295392 GATACCATAGAAAACGTAAAGGCGAAGATCCAAGACAAAGAGGGTATCCCACCGGATCAG 295451 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || || || |||||||| Sbjct 295452 CAGCGATTAATTTTTGCCGG 295471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || ||||| |||||||||||||| || | || Sbjct 293052 ATGCAGATTTTCGTGAAAACACTCACGGGAAAAACCATTACGCTCGAAGTTGAGCCGTCC 293111 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || || | || || ||||| |||||||| || || || ||||| Sbjct 293112 GACTCGATTGAAAATGTGAAGAATAAAATTCAAGATAAAGAAGGCATTCCCCCGGATCAG 293171 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| ||||||| || || Sbjct 293172 CAGCGTCTGATCTTCGCAGG 293191 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || || || |||||||| ||||| ||| | | Sbjct 294197 ATGCAGATATTTGTGAAAACTCTTACTGGCAAGACAATTACGCTGGAAGTGGAACCGTCG 294256 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || || ||| || ||||| |||||||| || || || ||||| Sbjct 294257 GATACTATTGAGAATGTGAAGACTAAA-ATACAAGATAAAGAAGGTATTCCGCCTGATCA 294315 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || | ||||||||||| Sbjct 294316 ACAGCGACTTATCTTTGCCGG 294336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895879141680